PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca8735.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

YABBY

Protein Properties

Length: 137aa MW: 15139.3 Da PI: 7.944

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca8735.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	63.2	1e-19	10	77	1	69
YABBY 1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslke 69 +d+ s +e++Cyv+Cn+Cnt+lav +P + l+++vtv+CGhC ++ ++ + q + +h + +l+ Dca8735.1 10 MDLASPPEHLCYVRCNYCNTVLAVVIPCKRLMETVTVKCGHCGNVSFLSTRPPLQGQCLDHH-QVTLQG 77 578899*************************************9977666655544443333.333332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.2E-20	15	100	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MNNMEEKVNM DLASPPEHLC YVRCNYCNTV LAVVIPCKRL METVTVKCGH CGNVSFLSTR 60 PPLQGQCLDH HQVTLQGYNF MDKPTESLCG TTTSNGDQQH KRGQPSSSSS SASTEPVSPR 120 PFVVKRICTS PPFTYTL

Functional Description ? help Back to Top
Source	Description
UniProt	Regulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269\|PubMed:14729915}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010680651.1	6e-58	PREDICTED: protein CRABS CLAW
Refseq	XP_010680652.1	6e-58	PREDICTED: protein CRABS CLAW
Swissprot	Q76EJ0	8e-27	YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBL	B9REB6	4e-40	B9REB6_RICCO; Protein CRABS CLAW, putative
STRING	XP_010680651.1	2e-57	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69180.1	6e-26	YABBY family protein