PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca8358.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

CPP

Protein Properties

Length: 1209aa MW: 134763 Da PI: 7.8203

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca8358.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	48.2	2.1e-15	793	832	2	41
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 + k+CnCkkskClk+YC+Cfaag +C+e C C++C+N e Dca8358.1 793 HPKRCNCKKSKCLKLYCDCFAAGLYCTEACACQGCCNIPE 832 6699*********************************765 PP
2	TCR	50.3	4.9e-16	880	918	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++a++ Cse C+Ce+CkN Dca8358.1 880 RHKRGCNCKKSMCLKKYCECYQANVGCSEGCRCEGCKNV 918 589***********************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03140	2.1E-89	28	409	IPR004158	Protein of unknown function DUF247, plant
SMART	SM01114	1.3E-13	792	833	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	34.388	793	920	IPR005172	CRC domain
Pfam	PF03638	1.3E-11	795	829	IPR005172	CRC domain
SMART	SM01114	1.9E-17	880	921	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	3.4E-11	882	917	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 1209 aa Download sequence Send to blast
MGDPNLDVVS LIREELNSLI LLSPLRCIYK VPENIRKVKE ESYRPWMVSI GPIYHQHPSL 60 QAMQTQKLRH LKRFLAQGNP TCDLDFYVGI IRGWEHDIRG CYAEEVSLSS NNFVKMVLLD 120 AVFIIDLLMW SSFKFSLENH PIDGIVEVFS RVAQDLYLEE NQLPFFVLKG LYDIAFGKKY 180 PGISFVDLTW SFMDCGCMPG KDVQHTTKSE KIRKHAPKIG HFVDFLRLCC LPSKLRSMPS 240 NIMNRYPLFP LSVSQLRAVG VKFVASTSTN LLDIKFSRGV LEIPKFNVQY TTESVFKSIM 300 IFEHCHYFLD SYFVDYIYFL DSLIKTPEDV EILVRKGIIE NWIGSNEAVA NIFNKITKNI 360 SLCSANFYYY DVCSELSVFA NTSWHRWKAV LSKDYFSHPW AVISVIYALD SPVFNFISNL 420 SPIQPVKAEP GAHGFPGLAS PPLLFKSPQI NSLQSLLNRK LQCSASLESP QDNDKHDKDG 480 EDAVKTVKSV PECNDLFISE EQRGCTVKNS EVVQCSPGCV DDFLTYPDDN TSCKQQTNDV 540 YQSSGFGSLK QRDCGSGGKN VTLRGSTPLK VKVGAPTKSI ISIKMVKNEA RHLIPSSESS 600 GRLSRLLTER SFDTSQQGNS LSEASHLERG TLRRCLFDAN QKKHSDGSDF RNPSDNKGII 660 NHPKPSTESR ASSITGSNSV AISKPLGIGL HLNSVVYPKS LDSSNGRHQS SLTELKGKNS 720 VVASDQSDGD AIATSSEKVP DIEHFYTPVP LEPGASTATT CLKRKFSPQR AENNEVPDQP 780 SPKSKRKKNN DDHPKRCNCK KSKCLKLYCD CFAAGLYCTE ACACQGCCNI PEKEDMVLET 840 RQQIESRNPL AFAPKVVQLV ADSPAIDKEV QNLSTPASAR HKRGCNCKKS MCLKKYCECY 900 QANVGCSEGC RCEGCKNVFG IREEYKIIHR FVVKKAADEM SEEIVDRKHE TTTVGSNFGN 960 SRVHASPNVT PTTPTLQYSD LRKNTHKSRP SFMQFLQTPD SQNDVLSFDE NSLNCPENPQ 1020 FHDMPSERCT EYIEEGALHT EKGFENTGDE STSSSSQRSN SAATLMAPPS SSNAISLQDM 1080 SPPIQPHVMN ESVVPSTTGS LRWRSSPVTP ITQSAGLEFQ NFSSGSKFSE MIEDDTPDLL 1140 KDSSTTETSV KVRSPNKKRI SAPHNPKDSS GSPLQNPKDS TESLKICHRF VLRALPAFPS 1200 LTPFSKKPQ

Sequence ? help Back to Top

Protein Sequence Length: 1209 aa Download sequence Send to blast

MGDPNLDVVS LIREELNSLI LLSPLRCIYK VPENIRKVKE ESYRPWMVSI GPIYHQHPSL  60
QAMQTQKLRH LKRFLAQGNP TCDLDFYVGI IRGWEHDIRG CYAEEVSLSS NNFVKMVLLD  120
AVFIIDLLMW SSFKFSLENH PIDGIVEVFS RVAQDLYLEE NQLPFFVLKG LYDIAFGKKY  180
PGISFVDLTW SFMDCGCMPG KDVQHTTKSE KIRKHAPKIG HFVDFLRLCC LPSKLRSMPS  240
NIMNRYPLFP LSVSQLRAVG VKFVASTSTN LLDIKFSRGV LEIPKFNVQY TTESVFKSIM  300
IFEHCHYFLD SYFVDYIYFL DSLIKTPEDV EILVRKGIIE NWIGSNEAVA NIFNKITKNI  360
SLCSANFYYY DVCSELSVFA NTSWHRWKAV LSKDYFSHPW AVISVIYALD SPVFNFISNL  420
SPIQPVKAEP GAHGFPGLAS PPLLFKSPQI NSLQSLLNRK LQCSASLESP QDNDKHDKDG  480
EDAVKTVKSV PECNDLFISE EQRGCTVKNS EVVQCSPGCV DDFLTYPDDN TSCKQQTNDV  540
YQSSGFGSLK QRDCGSGGKN VTLRGSTPLK VKVGAPTKSI ISIKMVKNEA RHLIPSSESS  600
GRLSRLLTER SFDTSQQGNS LSEASHLERG TLRRCLFDAN QKKHSDGSDF RNPSDNKGII  660
NHPKPSTESR ASSITGSNSV AISKPLGIGL HLNSVVYPKS LDSSNGRHQS SLTELKGKNS  720
VVASDQSDGD AIATSSEKVP DIEHFYTPVP LEPGASTATT CLKRKFSPQR AENNEVPDQP  780
SPKSKRKKNN DDHPKRCNCK KSKCLKLYCD CFAAGLYCTE ACACQGCCNI PEKEDMVLET  840
RQQIESRNPL AFAPKVVQLV ADSPAIDKEV QNLSTPASAR HKRGCNCKKS MCLKKYCECY  900
QANVGCSEGC RCEGCKNVFG IREEYKIIHR FVVKKAADEM SEEIVDRKHE TTTVGSNFGN  960
SRVHASPNVT PTTPTLQYSD LRKNTHKSRP SFMQFLQTPD SQNDVLSFDE NSLNCPENPQ  1020
FHDMPSERCT EYIEEGALHT EKGFENTGDE STSSSSQRSN SAATLMAPPS SSNAISLQDM  1080
SPPIQPHVMN ESVVPSTTGS LRWRSSPVTP ITQSAGLEFQ NFSSGSKFSE MIEDDTPDLL  1140
KDSSTTETSV KVRSPNKKRI SAPHNPKDSS GSPLQNPKDS TESLKICHRF VLRALPAFPS  1200
LTPFSKKPQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	2e-16	795	929	12	132	Protein lin-54 homolog
5fd3_B	2e-16	795	929	12	132	Protein lin-54 homolog
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021854759.1	0.0	protein tesmin/TSO1-like CXC 2
TrEMBL	A0A0K9QHI4	0.0	A0A0K9QHI4_SPIOL; Uncharacterized protein
STRING	XP_010670664.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22760.1	2e-60	Tesmin/TSO1-like CXC domain-containing protein