PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca7450.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

Dof

Protein Properties

Length: 395aa MW: 44281.4 Da PI: 6.0817

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca7450.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.9	2.2e-38	105	164	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+cprC+s++tkfCyynny+++qPr+fC++C+ryWt+GG +rnvPvG+grrknk+s Dca7450.1 105 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCRKCQRYWTAGGNMRNVPVGAGRRKNKAS 164 7899*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	7.5E-32	107	163	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.425	109	163	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	3.0E-25	110	162	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	111	147	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MLDPTITLFG KIIQVNGDVV LEVEDDCRRH NEVCVDDFNS DVHREDEVYK ELTEEQSMQN 60 DEPNGGISLG ETVDESATNA TEMSEITDLT DKASNDKDKQ LLKKPDKILP CPRCNSMDTK 120 FCYYNNYNVN QPRHFCRKCQ RYWTAGGNMR NVPVGAGRRK NKASAPRYCH MTVSDTDVAV 180 NNSGTVLSFG SDYPIPDSRA AENGDDRSSG STVTTNSMED QSKRQQFNGF NNQMQTPMQM 240 QCFQWPYMWN PAFPVPIYPH PYWNGAPVPW NGLWAPTQIR PGPTPNPPTS LGKRTREGEI 300 ISQPPTTATK TTKSSKVLIP KTLRIDDPDE AAKSSIWTTL GIKKDKGDPN VRKGFFNSLQ 360 SKGEGRNEGE IETSAALFKA NPVALCRSFN FQEKT

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MLDPTITLFG KIIQVNGDVV LEVEDDCRRH NEVCVDDFNS DVHREDEVYK ELTEEQSMQN  60
DEPNGGISLG ETVDESATNA TEMSEITDLT DKASNDKDKQ LLKKPDKILP CPRCNSMDTK  120
FCYYNNYNVN QPRHFCRKCQ RYWTAGGNMR NVPVGAGRRK NKASAPRYCH MTVSDTDVAV  180
NNSGTVLSFG SDYPIPDSRA AENGDDRSSG STVTTNSMED QSKRQQFNGF NNQMQTPMQM  240
QCFQWPYMWN PAFPVPIYPH PYWNGAPVPW NGLWAPTQIR PGPTPNPPTS LGKRTREGEI  300
ISQPPTTATK TTKSSKVLIP KTLRIDDPDE AAKSSIWTTL GIKKDKGDPN VRKGFFNSLQ  360
SKGEGRNEGE IETSAALFKA NPVALCRSFN FQEKT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021761615.1	1e-112	cyclic dof factor 3-like isoform X1
TrEMBL	A0A0K9R752	1e-109	A0A0K9R752_SPIOL; Uncharacterized protein
STRING	XP_010678503.1	6e-99	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	2e-68	cycling DOF factor 3