PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca7419.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 657aa    MW: 71394.6 Da    PI: 7.2768
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca7419.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH505.4e-16410456455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 hn  Er+RRdriN+++  L+el+P++      K++Ka++L +A++Y+k Lq
  Dca7419.1 410 VHNLSERKRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIDYLKTLQ 456
                6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.19E-17402460No hitNo description
SuperFamilySSF474597.98E-21403468IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-20403464IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.317406455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-13410456IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-18412461IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MTNEKVDAIQ DRASNSYHPP PSKPETDFCE LVWENGQIAV QGQSSKARNG PLTTNDYQSL  60
VHNPQGGRDA NGLKMNKFSA MDSVLCDMGL AQDVDMLPWL SYSSEDPLHN DYTCDYLPEL  120
SGITMNDVPT DNYLAFGEKK SGRHGDGHPN ASKGDSNTVK HSRGETTGVA QFLLSSQHNV  180
LKSGVSDITG DYVGNLNNVD SRDVNASSLR AFTRSRLQKL DAGQPSTSSS FTNFPYFSRS  240
AALVKANHGM ANSSKRPEND AHRYTVTSSI PTDSTLVNSR ACSRRDIGVH NKSVQAPVDN  300
ISRSLPRKPT EEVVSAKRTS REEGGTNDAA GSKVGMGSQR NMEPAIAASS VCSGNSVDRA  360
SNEREYDLKR KSRETTESEG PSDEVEDESV GAKKVAHPRA SSKRSRAAEV HNLSERKRRD  420
RINEKMRALQ ELIPNCNKVD KASMLDEAID YLKTLQLQVQ MLSMGAGLYM HPMMLPPGMQ  480
PIHGAQMPHF SPMMGMGMGF GMNMLDMNML PFQGPRYPVP GTPAQYPGIP SSSLQTFGHL  540
GQSLQTSMQQ PPLTVTNAAP VNVPMGLNVS GVPGSSGGSN LVPHNVTTTS DQQMQPSTFR  600
SDSMNQATTN QIGCWFALIF TLLISVSQFI NGRQQIFRKQ NANAPESSRP GTSEDVA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1414419ERKRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021772526.10.0transcription factor PIF3-like isoform X1
TrEMBLA0A0K9RD810.0A0A0K9RD81_SPIOL; Uncharacterized protein
STRINGXP_010674470.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.27e-54phytochrome interacting factor 3