PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca7233.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family TALE
Protein Properties Length: 620aa    MW: 69395.7 Da    PI: 7.5679
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca7233.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox308.8e-104394712254
                SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                ++yp+ ++++ LA+++gL+ +qV++WF N R +
  Dca7233.1 439 HPYPTDTDKQMLASQTGLSRNQVSNWFINARVR 471
                89*****************************88 PP
2BELL92.83.3e-30295363472
       BELL   4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                + ++kkakLl+++eeV+kr+kqy++q+++vis+Fe v gl +a+pY+s  lk iSrhF++Lk+aia+q+
  Dca7233.1 295 DCHEKKAKLLHMQEEVCKRHKQYHQQMEMVISAFESVPGLSNATPYISRSLKIISRHFKSLKNAIADQV 363
                6789***************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005746.7E-38226361IPR006563POX domain
PfamPF075261.3E-31231360IPR006563POX domain
PROSITE profilePS5007112.017412475IPR001356Homeobox domain
CDDcd000862.27E-12415476No hitNo description
SMARTSM003895.0E-10415479IPR001356Homeobox domain
SuperFamilySSF466895.13E-17417481IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.4E-28418479IPR009057Homeodomain-like
PfamPF059201.5E-18432471IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010229Biological Processinflorescence development
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MEMSNDYMSE LHVAQQRRKD KLRVQQLEDL HPNNFHHSSS LVFPSEMLNF PASQSAVYAN  60
IHPSRFVTPS TSDSCDPRPL QSCDNWVPSY DYHGRRNLSH FLPHINNSSS NNCSNNPTTA  120
TAEVLAAHYY NQSHVNSWEN GANELPLLPS FVSQANDASH GLSLSLSSNQ ICEMHHLSEP  180
RELKPLELGT ISPIIKLDSG KNQIQDVVVG SSTHVYRNVG PLGPFTGYAT ILRGSKFLKP  240
AQVMLDEFLT AAGLRHVREC EEVESLPDSN ALVPKFHSSN DMSSGSVSCE SYRPDCHEKK  300
AKLLHMQEEV CKRHKQYHQQ MEMVISAFES VPGLSNATPY ISRSLKIISR HFKSLKNAIA  360
DQVKLIKRAL GEDLSTPTSY MKGDNSSSRF EHSFARVKTG GIGGTGFGAH QNHIWRPQRG  420
LPERAVSVLR AWLFDHFLHP YPTDTDKQML ASQTGLSRNQ VSNWFINARV RIWKPMVEEI  480
HMLETKNGSG RSEPNPNQKH TADGHNPSMN AICDSKQLDY MGSSSYMEES RGESNANQLA  540
HNKTSRIETH QIPTTMDGSI IGFLPYQRRG MELGGLGGAV SLTLGLRHGS ETTHQQQLQH  600
QFQHQGMHHF GGHVMHDFTG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A5e-16421479563Homeobox protein Meis2
3k2a_B5e-16421479563Homeobox protein Meis2
4xrm_A6e-16421479563Homeobox protein Meis2
4xrm_B6e-16421479563Homeobox protein Meis2
4xrs_A5e-16421478158Homeobox protein Meis1
4xrs_B5e-16421478158Homeobox protein Meis1
5bng_A5e-16421479159Homeobox protein Meis2
5bng_B5e-16421479159Homeobox protein Meis2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021766465.10.0BEL1-like homeodomain protein 9 isoform X1
TrEMBLA0A0K9QCS30.0A0A0K9QCS3_SPIOL; Uncharacterized protein
STRINGXP_010689104.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.12e-85BEL1-like homeodomain 8