PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca7070.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family GRF
Protein Properties Length: 392aa    MW: 43098.8 Da    PI: 8.3867
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca7070.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.74.7e-2488132145
        WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                daepgrCrRtDGKkWRCsr+v +++k+CErH+hrgr rsrk++e 
  Dca7070.1  88 DAEPGRCRRTDGKKWRCSRDVAPNSKYCERHMHRGRPRSRKHVEH 132
                79****************************************985 PP
2QLQ55.32e-192252232
        QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLl 32
               aFTaaQ+ +L++Q+++yKy++a++PvPp+Ll
  Dca7070.1 22 AFTAAQWKELERQAMIYKYMMASLPVPPQLL 52
               8****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009517.4E-102157IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.1E-142252IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.8832257IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.36688132IPR014977WRC domain
PfamPF088796.7E-2089131IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010114Biological Processresponse to red light
GO:0010218Biological Processresponse to far red light
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MTTTTGGGGG VGGGGIGVGG YAFTAAQWKE LERQAMIYKY MMASLPVPPQ LLYSSNYSPN  60
YSTFTPASYF MGKYGSEFSV KWSGNNKDAE PGRCRRTDGK KWRCSRDVAP NSKYCERHMH  120
RGRPRSRKHV EHQLLRQDNQ PQSLSNLPIN NDTTTTNNNN NNISVKAIKG NVTKKTRMND  180
PSVGPCNVPS SKGLIFDQSV VSNSITFEDS RNLTWSDEQQ WHQLMQSNIN SSVFPHQLEG  240
HASNLNSTGG LITKTDMGLL ERPLFDAWST GVAETKDNRE NNHNNKFPNS SSNLVDDEMC  300
HIHMGLGLID SWVTSSTTPG GPLAEVLRPG IPSMSDITPP ATAVSSPSGV LQKTLATFSD  360
SSGSNSPVCH HHHHHHHNSN VTSDMLPFNW LN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666149.11e-148PREDICTED: growth-regulating factor 7
TrEMBLA0A0J8B8Z51e-147A0A0J8B8Z5_BETVU; Uncharacterized protein
STRINGXP_010666149.11e-148(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53660.14e-41growth-regulating factor 7