PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca6487.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | CPP | ||||||||
Protein Properties | Length: 255aa MW: 28161.5 Da PI: 6.6942 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 52.5 | 9.4e-17 | 28 | 66 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks ClkkYCeC++a + Cs+ C+Ce+CkN Dca6487.1 28 RHKRGCNCKKSMCLKKYCECYQASVGCSDGCRCEGCKNV 66 589***********************************5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51634 | 18.893 | 1 | 68 | IPR005172 | CRC domain |
SMART | SM01114 | 1.6E-17 | 28 | 69 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 2.2E-12 | 30 | 65 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MLGVLRFENR GHGNLQEVQN LSTPASARHK RGCNCKKSMC LKKYCECYQA SVGCSDGCRC 60 EGCKNVFGIR EEYKIIRRFV VKKAADEMSE EIVDGKHENT TVGSNFGNSR VHASPNVIPT 120 TPTLQYSDLR KNTQKSRPSF MQFLQTPDSQ NDVLSSDENS LNCTENPQFH DMLSERCTEY 180 IEGALHTEKG FENTGDESTS SSSQRSNSAA TLIAPPSSNA IGLQDMSLPI QPHVMNESVV 240 PSTTGYHLQL GLSII |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010670664.1 | 9e-59 | PREDICTED: protein tesmin/TSO1-like CXC 2 | ||||
Refseq | XP_010670665.1 | 9e-59 | PREDICTED: protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | A0A0K9QHI4 | 2e-53 | A0A0K9QHI4_SPIOL; Uncharacterized protein | ||||
STRING | XP_010670664.1 | 4e-58 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 1e-23 | TESMIN/TSO1-like CXC 2 |