PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca62424.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 366aa    MW: 40079.2 Da    PI: 6.5666
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca62424.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.61.3e-103862226
                -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                +++ C +++ t tC++Gd+CkF H+
  Dca62424.1 38 GEKDCAHYMLTRTCRFGDTCKFDHP 62
                7889********************8 PP
2zf-CCCH36.11.1e-11114138327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 +++C+f+ +tG Ck+G++CkF+H++
  Dca62424.1 114 EPNCSFYVKTGKCKFGATCKFHHPK 138
                 799********************96 PP
3zf-CCCH352.4e-11187211226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 +++ C+f+++tG Cky ++C+++H+
  Dca62424.1 187 GEVDCPFYMKTGSCKYAANCRYNHP 211
                 5789********************9 PP
4zf-CCCH38.32.2e-12267291226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 +++ C+f+++ G+Ck+G+ CkF H+
  Dca62424.1 267 GQSACDFYMKAGICKFGEACKFDHP 291
                 6789********************9 PP
5zf-CCCH37.24.8e-12316337627
                 -SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                 C+f+++tGtCkyG +Ck+ H+p
  Dca62424.1 316 CPFYMKTGTCKYGVTCKYDHPP 337
                 ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.1783664IPR000571Zinc finger, CCCH-type
SMARTSM003560.00243663IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-53763IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-83862IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.0014261IPR000571Zinc finger, CCCH-type
SMARTSM003564.8E-5111138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.737111139IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-9114138IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-6115139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-5117137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.136185213IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-6185212IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-8187211IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-5189212IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-4191210IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.352265293IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-6265292IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-6266293IPR000571Zinc finger, CCCH-type
PfamPF006425.9E-10267291IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-4271291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.094310338IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-6310337IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5314337IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9316337IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4316335IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MGSHMLGQSD AWLASDSLAK RPKFQSACNL PVYPQRPGEK DCAHYMLTRT CRFGDTCKFD  60
HPIWVPEGGI PDWKEIQLPP IPSDFHPERP GELDCPAVSD QTETAADLPE RPSEPNCSFY  120
VKTGKCKFGA TCKFHHPKDI QIPLDEEEAG NEEHTNGNRT SEKNEGKTLI VDPPSAFNSK  180
GLPMRSGEVD CPFYMKTGSC KYAANCRYNH PDRNDINPPV ASLLASPIAN LPMGLVSSAA  240
AILQSFQPSL AQTTLGLGAV NYPQRPGQSA CDFYMKAGIC KFGEACKFDH PVDRSASKNV  300
KLTLAGYPRR EGAVHCPFYM KTGTCKYGVT CKYDHPPPGE VVAATGKENA ETTKEAKENK  360
ENDESA
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693153.11e-168PREDICTED: zinc finger CCCH domain-containing protein 37
SwissprotQ941Q31e-147C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A0J8BGV71e-167A0A0J8BGV7_BETVU; Uncharacterized protein
STRINGXP_010693153.11e-168(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-147floral homeotic protein (HUA1)