PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca62384.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

bHLH

Protein Properties

Length: 490aa MW: 54571.6 Da PI: 6.9796

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca62384.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.5	1.3e-09	283	330	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Dca62384.1 283 SHSLAERVRREKISERMRYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 330 8************************....999***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	7.31E-10	277	334	No hit	No description
SuperFamily	SSF47459	1.83E-16	277	346	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-16	279	342	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.516	279	329	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.7E-7	283	330	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.8E-9	285	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence Send to blast
MNRSYLHTIH PLNMATNIPG VKGMEMSVLE QQKMVLKRQH EQIFKVQHEE ELSCYNDLSI 60 LPYLSAQPQT FQIHYMGCGP SATVAGRTTE IVDRPIKADP NPEHEWVDFG LQQSGVTVEH 120 SGVESAGQVT SPCLGMNYAI SKTASFPPIP PVAETAMKLP HNNVEGGENS PSEQKLGGQM 180 WTENFRKRKP EKSLMTPQVG EAEEGNKSKR SKGCSKEEVS KITEHKCNTN NSRSKQKEIS 240 NNDNEKKNKE TSGCTSKDNS KNSEVQKPDY IHVRARRGQA TDSHSLAERV RREKISERMR 300 YLQDLVPGCN KITGKAGMLD EIINYVQSLQ RQVEFLSMKI AAASPTVDFN IDELIAKEVL 360 EACSSSLPTI GVSPDFANPN YLQYNLLHQM APVGGPEVVA SSIDMGLRRN ISAPASMPDT 420 FFDTSCFNVT NSVLWGADLQ NIYSMEFQQG RSTTFPVQTF TGRQHSKVYM NFPASIVSNS 480 LPISTEKYEL

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence Send to blast

MNRSYLHTIH PLNMATNIPG VKGMEMSVLE QQKMVLKRQH EQIFKVQHEE ELSCYNDLSI  60
LPYLSAQPQT FQIHYMGCGP SATVAGRTTE IVDRPIKADP NPEHEWVDFG LQQSGVTVEH  120
SGVESAGQVT SPCLGMNYAI SKTASFPPIP PVAETAMKLP HNNVEGGENS PSEQKLGGQM  180
WTENFRKRKP EKSLMTPQVG EAEEGNKSKR SKGCSKEEVS KITEHKCNTN NSRSKQKEIS  240
NNDNEKKNKE TSGCTSKDNS KNSEVQKPDY IHVRARRGQA TDSHSLAERV RREKISERMR  300
YLQDLVPGCN KITGKAGMLD EIINYVQSLQ RQVEFLSMKI AAASPTVDFN IDELIAKEVL  360
EACSSSLPTI GVSPDFANPN YLQYNLLHQM APVGGPEVVA SSIDMGLRRN ISAPASMPDT  420
FFDTSCFNVT NSVLWGADLQ NIYSMEFQQG RSTTFPVQTF TGRQHSKVYM NFPASIVSNS  480
LPISTEKYEL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021731578.1	0.0	transcription factor HBI1-like
TrEMBL	A0A0K9QN27	1e-180	A0A0K9QN27_SPIOL; Uncharacterized protein
STRING	XP_010690861.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34530.1	2e-55	cryptochrome-interacting basic-helix-loop-helix 1