PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca61862.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 1025aa    MW: 115657 Da    PI: 8.1906
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca61862.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.5e-086484425
                ---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH  4 elCrffartGtCkyGdrCkFaH 25
                +lCr+++r G C +G++Ck+ H
  Dca61862.1 64 PLCRDYLR-GKCTRGSSCKYLH 84
                89******.************* PP
2zf-CCCH18.53.7e-06174197327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 +++Cr f+  G C +G++C++ H++
  Dca61862.1 174 RSPCRKFQS-GRCDRGSTCRYLHSE 197
                 789*****9.*************95 PP
3zf-CCCH201.2e-06254277327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 +++Cr+f++ G C++G++C++ H+p
  Dca61862.1 254 RSPCRNFLQ-GRCHFGASCRRWHPP 277
                 689******.***********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.1E-65986IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.3426087IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-66086IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-56285IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-66484IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.333125152IPR000571Zinc finger, CCCH-type
SMARTSM003569.0E-5126151IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.8E-4128151IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.633171198IPR000571Zinc finger, CCCH-type
SMARTSM003568.0E-5172197IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-4174197IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-5176197IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.474251278IPR000571Zinc finger, CCCH-type
SMARTSM003560.13252277IPR000571Zinc finger, CCCH-type
SMARTSM003560.0036450476IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.286450477IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-5452479IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.40.50.10001.6E-11782975IPR023214HAD-like domain
SuperFamilySSF567847.66E-20782974IPR023214HAD-like domain
PROSITE profilePS5096927.044783964IPR004274FCP1 homology domain
SMARTSM005771.3E-7786947IPR004274FCP1 homology domain
PfamPF030313.0E-21788970IPR004274FCP1 homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1025 aa     Download sequence    Send to blast
MEQAVAERPF TQEYHANQHH AWRNGPEGVR GSYPLQDPSQ NRDPRRWTGS FNGEDTRDDK  60
SRAPLCRDYL RGKCTRGSSC KYLHQQSGFV NHDGATFRGN SQQNLGPVAE PRNMQLYSAN  120
EDADFSRRRP CRNYQSGRCF RGSTCMYLHT EFTNGETIVD DASRRPFFRE GRERSPCRKF  180
QSGRCDRGST CRYLHSEVAI SDRPVQGWNA DQQHHGAVAS GNFDNNRRMP QVNDAANNEY  240
NNTRFPLPNE YRSRSPCRNF LQGRCHFGAS CRRWHPPDAF KNNLTPEQQP RVTENANNHG  300
FGDGRSALSS RERIESNQQN NLRTASFSGD PRGRPACQYF HRGSNYQGAP SENLRPATIY  360
HRTRYDLGEV RHQGVSTASR DPSFDRGNVV REVYSHGMRP HQDTHVGLNG SLNDRGASTH  420
YNPETINGAS RSWSLERKRI RPASDVGGYQ QQPEVCLKFT KGRCDQGGNC RYLHSFHEYA  480
SSISHQTQKS HLEATADLTN VGQPNQSAET TEVYVPDTSR DADVNLWSQP YKRQRTSNGF  540
HFAPEDNARY RTLRQDYSQD NYNRSRSYHV AQNQLPDRRP YNRYVPATGM NNVQHCNVTA  600
TFATPVHGDT NSCFMAPDGH GEVLSNEHTL RLTGQNGMES VNDSMAVNIA GRQTSINQEH  660
YISEARAAFV LGNSESAGAK VDSSDTSLQC LPTTSSMEGT SLDHKSFTLS SVVSDNISRD  720
VPVTDDIGVV LANKRPFEEP VAAVNGQMTI VDMSPATTGN GIVVSDAING SLTTSQLSDA  780
GILKSKRKLL VLDVNGLLAD IVAEFPDTYK PDAMVAGKGV FKRPFCDEFL RFCFEKFDVG  840
IWSSRTEKNV TRVLECLMED TMNKLLFCWH QSHCTQTGYR TVENNKKPLV LKELKKLWEK  900
EEEGLPWNKG FYDESNTILL DDSPYKALRN PPFTAIFPFP YSFRHAVDKS LGPDGELRLY  960
LERLAEAENV QKFIQENPFG QRPITKSNLS WAFYSKIVGE PTGQQKAISS SHGEPRLPYI  1020
APPFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-