PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca61419.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family Trihelix
Protein Properties Length: 410aa    MW: 46443 Da    PI: 6.6114
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca61419.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix85.56.5e-2758133277
    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsesss 77 
                 W ++e++ Li++rrem++ ++++k++k+lWee+s kmrergf rsp++C++kw+nl k++kk+k+++++r+s+s s
  Dca61419.1  58 WVQEETRNLINFRREMDSLFNTSKSNKHLWEEISLKMRERGFDRSPTMCTDKWRNLLKEFKKVKHHQSNRHSNSNS 133
                 *******************************************************************999665543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.17750114IPR017877Myb-like domain
SMARTSM007173.6E-554116IPR001005SANT/Myb domain
CDDcd122033.63E-3156121No hitNo description
PfamPF138371.1E-1857157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MYISDATTDD DTKTTTANHH QNDMMIEVVV PTPTSSHHHH HHHNNHHSNP TKKRAETWVQ  60
EETRNLINFR REMDSLFNTS KSNKHLWEEI SLKMRERGFD RSPTMCTDKW RNLLKEFKKV  120
KHHQSNRHSN SNSSSNGNGN GNGSNGTAKM SYYKEIDEIL RGRSRCSSSS IVRQPHLDDD  180
AAAAAAAAAA AHSSKVDSFL HFSDKGIDDA SIPFGPMEAN GRATLNLERG LDHEGHPLAI  240
TVADAVADDG VPPSFWRGTP GNGDDTHSYG GRVINVKWGD YTRRIGVDGT ADAIKDVIRS  300
AFGLRTRRAF WLEDEDQVVR SLDRDMPLGT YTLHLDEGMT IKLCHYEESD HIPFPGQTIS  360
HTEEKTFYTE EDFRDFMNRR GWSSLRELSG YRNIDNLDDL RPDSLYRGVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A9e-4252155186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00141DAPTransfer from AT1G13450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010682875.10.0PREDICTED: trihelix transcription factor GT-1 isoform X1
SwissprotQ9FX531e-160TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A0K9RAW00.0A0A0K9RAW0_SPIOL; Uncharacterized protein
STRINGXP_010682875.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-157Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]