PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca61168.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family HD-ZIP
Protein Properties Length: 134aa    MW: 15765 Da    PI: 9.5784
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca61168.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.37.1e-2048102357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                 k++++++eq++ Le  F  ++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  Dca61168.1  48 KKRKLSDEQVNMLEISFGCEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKN 102
                 56799************************************************95 PP
2HD-ZIP_I/II118.73.1e-3848133287
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                  kkr+ls+eqv++LE sF  e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE+++++L++ +++l+ +++rLe+ev  L
   Dca61168.1  48 KKRKLSDEQVNMLEISFGCEHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEFSKLRKDHETLVVDKCRLETEVCML 133
                  9********************************************************************************99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.64943103IPR001356Homeobox domain
SMARTSM003896.1E-1946107IPR001356Homeobox domain
SuperFamilySSF466891.24E-1847112IPR009057Homeodomain-like
PfamPF000463.7E-1748102IPR001356Homeobox domain
CDDcd000867.43E-1648104No hitNo description
Gene3DG3DSA:1.10.10.601.7E-2050110IPR009057Homeodomain-like
PRINTSPR000316.9E-67483IPR000047Helix-turn-helix motif
PROSITE patternPS00027078101IPR017970Homeobox, conserved site
PRINTSPR000316.9E-68399IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MLVEDDQVAL ISQLYSGLYT DQAAPPKEPP KRRRRRKNKG DGSLSEAKKR KLSDEQVNML  60
EISFGCEHKL ESERKDRLAS ELGLDPRQVA VWFQNRRARW KNKKLEEEFS KLRKDHETLV  120
VDKCRLETEV CMLH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13035KRRRRR
23036KRRRRRK
33250RRRRKNKGDGSLSEAKKRK
43450RRKNKGDGSLSEAKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021714068.11e-57homeobox-leucine zipper protein ATHB-40-like
SwissprotO232081e-55ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLB9MXR72e-54B9MXR7_POPTR; Uncharacterized protein
STRINGXP_010681120.12e-55(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.12e-52homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]