PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca60701.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

C3H

Protein Properties

Length: 482aa MW: 54545.4 Da PI: 9.1441

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca60701.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25	3.2e-08	454	477	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++lCr++ + G C+yG++CkF Hg Dca60701.1 454 RQKLCRYYPQ-GRCHYGNQCKFLHG 477 678*****.***********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.720.30	1.6E-8	86	132	IPR003034	SAP domain
SuperFamily	SSF68906	1.67E-7	87	132	No hit	No description
PROSITE profile	PS50800	9.846	97	131	IPR003034	SAP domain
SMART	SM00513	2.2E-4	97	131	IPR003034	SAP domain
Pfam	PF02037	7.8E-10	98	131	IPR003034	SAP domain
PROSITE profile	PS50103	15.619	453	479	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.8E-5	454	477	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.44E-6	454	477	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	8.8E-7	456	478	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence Send to blast
MAKSQINYIN PEEDDNELDD STDEEFDSDD SEVDPSFTDE LLSAQSNLSK LSINNQSNSR 60 NGEESQEDDE GLISQKLSKE DALIFENVQK IIDCGKVEKL KVDQCKVYLR KHGLRLTGKK 120 DILIQRIKEH IEILNGGGEA KYPPSSFVLN CKGDACLGDV VMFEQTVYEG YSIVSRSAAG 180 PPCGKRTVAG RIVNESYGAA KQQHTFTVEV LWSKGQNPLP PLHPLLIKGR NLYKLDTRRQ 240 KWENEAERQR VLSEKHTRGT VARSNREVRI QEKMARKSLK GVRVVSKNKA NPCHQNDSKH 300 ATDQQQVPSK GVRVVSKNKA NPCHQNESKL ATDQQQVLSK VPTDRRVIPS SALSRYPLTQ 360 PDKPDLAAPH LPIDHRVIPS SFLSRYPLTQ IDEPALPAPH FLQQQRFDYR PPQNTYSTHG 420 YQRQPVNSAL SCSFTERNPP RTAMTGPRQL VVQRQKLCRY YPQGRCHYGN QCKFLHGSNV 480 NR

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence Send to blast

MAKSQINYIN PEEDDNELDD STDEEFDSDD SEVDPSFTDE LLSAQSNLSK LSINNQSNSR  60
NGEESQEDDE GLISQKLSKE DALIFENVQK IIDCGKVEKL KVDQCKVYLR KHGLRLTGKK  120
DILIQRIKEH IEILNGGGEA KYPPSSFVLN CKGDACLGDV VMFEQTVYEG YSIVSRSAAG  180
PPCGKRTVAG RIVNESYGAA KQQHTFTVEV LWSKGQNPLP PLHPLLIKGR NLYKLDTRRQ  240
KWENEAERQR VLSEKHTRGT VARSNREVRI QEKMARKSLK GVRVVSKNKA NPCHQNDSKH  300
ATDQQQVPSK GVRVVSKNKA NPCHQNESKL ATDQQQVLSK VPTDRRVIPS SALSRYPLTQ  360
PDKPDLAAPH LPIDHRVIPS SFLSRYPLTQ IDEPALPAPH FLQQQRFDYR PPQNTYSTHG  420
YQRQPVNSAL SCSFTERNPP RTAMTGPRQL VVQRQKLCRY YPQGRCHYGN QCKFLHGSNV  480
NR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021865531.1	1e-139	zinc finger CCCH domain-containing protein 62-like
TrEMBL	A0A0K9QHJ2	1e-137	A0A0K9QHJ2_SPIOL; Uncharacterized protein
STRING	XP_010685268.1	1e-136	(Beta vulgaris)