PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca60472.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

BBR-BPC

Protein Properties

Length: 292aa MW: 32505.8 Da PI: 9.9953

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca60472.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	306.3	1.1e-93	1	292	1	301
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki..rernlalsekkaavaerd.........maflqrdkalaernkalverdnkllalllve 88 md d+ +n+gyy+ +k +l+lqlm+ +aer i re+ + l ++++ ++rd +++ +r+++++ + n++l++++++ Dca60472.1 1 MDGDSVF-KNWGYYDLP--MK-HLNLQLMTNMAERKPLIgyRESSALLGSSNSGSNSRDysvpsshyqVDY-MRETWIHG---DTNTNSNRYLNIMPTN 91 6666544.89***99..77.*********99888888888788888899999999998889.99*9...5667889999999988 PP GAGA_bind 89 nslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaee.akekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader 186 +s ++ +t+ +++++q s q+ +++ ++e+ ++ ++ ++ + ++ + kkr+ +k k +k+kk+kk ++ +++ + + +r Dca60472.1 92 HS--------YGYPTETTPAHHHHQ-SSMQMLRQPESSNDEQ-VDR-MVQAEPGTgENYNGPLKKRSAGKADKGPKMKKPKKGPTGPREGGSGSA--QR 177 87........555566666666666.3344444444433333.333.333444440444566788999999*******8877755554444..79 PP GAGA_bind 187 skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDL 285 +k+ kk++++ +ng+++D+s++P+PvCsCtGa++qCY+WG GGWqSaCCtt +S+yPLP+s+krrgaRiagrKmS gafkk+LekLa+eGy++s+p+DL Dca60472.1 178 AKTAKKTTEVLINGIDMDISSIPIPVCSCTGAPQQCYRWGYGGWQSACCTTVMSMYPLPMSAKRRGARIAGRKMSLGAFKKVLEKLASEGYNFSTPIDL 276 *********************************************************************************************** PP GAGA_bind 286 kdhWAkHGtnkfvtir 301 ++hWAkHGtnkfvtir Dca60472.1 277 RTHWAKHGTNKFVTIR 292 *************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	2.9E-130	1	292	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	1.7E-99	3	292	IPR010409	GAGA-binding transcriptional activator

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009723	Biological Process	response to ethylene
GO:0050793	Biological Process	regulation of developmental process
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MDGDSVFKNW GYYDLPMKHL NLQLMTNMAE RKPLIGYRES SALLGSSNSG SNSRDYSVPS 60 SHYQVDYMRE TWIHGDTNTN SNRYLNIMPT NHSYGYPTET TPAHHHHQSS MQMLRQPESS 120 NDEQVDRMVQ AEPGTGENYN GPLKKRSAGK ADKGPKMKKP KKGPTGPREG GSGSAQRAKT 180 AKKTTEVLIN GIDMDISSIP IPVCSCTGAP QQCYRWGYGG WQSACCTTVM SMYPLPMSAK 240 RRGARIAGRK MSLGAFKKVL EKLASEGYNF STPIDLRTHW AKHGTNKFVT IR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00253	DAP	Transfer from AT2G01930	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021718884.1	1e-147	protein BASIC PENTACYSTEINE1-like
TrEMBL	A0A0J8B6K9	1e-145	A0A0J8B6K9_BETVU; Uncharacterized protein
STRING	XP_010665717.1	1e-146	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	3e-59	basic pentacysteine 2