PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca60154.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 1045aa    MW: 116086 Da    PI: 4.9353
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca60154.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.4e-1877123148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg WT eEde+l  av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
       Dca60154.1  77 RGQWTHEEDEILRAAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 123
                      89*****************************9.************986 PP
2Myb_DNA-binding66.93.5e-21129175148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEde++v++vk++G++ W+tIa++++ gR +kqc++rw+++l
       Dca60154.1 129 KGPWSKEEDEIIVQLVKKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 175
                      79******************************.*************97 PP
3Myb_DNA-binding53.74.7e-17181223145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      r +WT+eE+++l++a++++G++ W+   ++++ gRt++++k++w+
       Dca60154.1 181 REAWTQEEELILIRAHELHGNK-WAELTKYLP-GRTDNSIKNHWN 223
                      789*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.63872123IPR017930Myb domain
SuperFamilySSF466891.94E-1875137IPR009057Homeodomain-like
SMARTSM007171.7E-1476125IPR001005SANT/Myb domain
PfamPF002494.2E-1577123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2479140IPR009057Homeodomain-like
CDDcd001672.52E-1380123No hitNo description
PROSITE profilePS5129434.385124179IPR017930Myb domain
SuperFamilySSF466894.49E-32126222IPR009057Homeodomain-like
SMARTSM007173.9E-20128177IPR001005SANT/Myb domain
PfamPF002493.9E-19129175IPR001005SANT/Myb domain
CDDcd001671.55E-17131175No hitNo description
Gene3DG3DSA:1.10.10.606.9E-28141182IPR009057Homeodomain-like
PROSITE profilePS5129421.542180230IPR017930Myb domain
SMARTSM007177.4E-16180228IPR001005SANT/Myb domain
PfamPF002492.6E-15181224IPR001005SANT/Myb domain
CDDcd001672.25E-12183223No hitNo description
Gene3DG3DSA:1.10.10.602.2E-22183230IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 1045 aa     Download sequence    Send to blast
MGGDRKVTAA LPPPPPAPPP AANGSNEDFP RAKPLHGDDY ALSISAYAFP TSHFHLKANK  60
LCPAFRRTSG PTRRSTRGQW THEEDEILRA AVQRFKGKNW KKIAECFKDR TDVQCLHRWQ  120
KVLNPDLIKG PWSKEEDEII VQLVKKYGPK KWSTIAQHLP GRIGKQCRER WHNHLNPGIK  180
REAWTQEEEL ILIRAHELHG NKWAELTKYL PGRTDNSIKN HWNSSVKKKL DSYKASGLLE  240
QFQGVPLTIH QNPSIPENDS RVQYSSGDGS FFRDGIKGEE ISECSQVDVS SQTPSDMSNA  300
GCLREDFLLS EESDQGKLQS TSPTAPCSEQ YYTDLDEMTF TISDIPCDFT CSSGYLEGNP  360
SEDVGVSARE CNFGSISLPL NSDVDLAEDS CLPQNYYAAG ANQNSVASVA KCGNDCNVGS  420
HMVRPEERSS QFIVTREDGD TNVERCSDMV DLEKYGDFMS FQSLLQFAET DGTASLQPYN  480
HSSAFLLEGS NNDNITSIPT DISGLNGVIA SDRKPDQRND SLPEEGYVHE HGNASSQGYT  540
EQTHLLDSSE LVPVNKCNSE TSDDQQRTPP RAKQPVFSTF GSEGGSLCYE PPRFPSLDMP  600
FFSCDLAQSG TDSRQDFSPL GIRQLMMSAS SLTPFKLWDS PSSDHSPDAV LKSAAKTFAC  660
TPSIMKKRHR DLLSPLSPFS ERRLNKKAGN DVNQGFVCTS RLTKEFSHLD VIFSETVQCK  720
ETVSMSDNSK EQLKASTEDK ENVCPEVRWS TEDTNHDKEF EARTPDKDRH QNHLDNLEKG  780
TTPNANSKTT SYEECALETP GGVLVERHVN DAEFPSADGK NASVRTSEDD GSKCTLKEVA  840
FSELPIGDIE FFVSPSPFDR MKQNNGAEAS SSGQPVSAVT TVMADSLVNE VGAENLNFFG  900
GTPFRRSMES PSGWKSPWYF SSLVSCQRFE PDITIEDIGI FMSPGENRSF DAIGLMKQIN  960
DQGADTYADA REVLGKETPE SILRQTCSKK LNLEGESSNV KDSLLKGRPH MTPNIMRMWD  1020
ASEVDGEDEM CRCHKLVKPL FAKEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-68772306159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-68772306159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667918.10.0PREDICTED: myb-related protein 3R-1
RefseqXP_010667925.10.0PREDICTED: myb-related protein 3R-1
TrEMBLA0A0J8D1H60.0A0A0J8D1H6_BETVU; Uncharacterized protein
STRINGXP_010667918.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein