PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca60037.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 413aa    MW: 44619.1 Da    PI: 6.8445
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca60037.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.71.5e-16213259455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn+ ErrRRdriN+++  L++l+P+a      K +Ka++L +++eY+k+Lq
  Dca60037.1 213 VHNQSERRRRDRINQKMKALQKLVPNA-----SKTDKASMLDEVIEYLKQLQ 259
                 6*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.18E-19207277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.79209258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-19213267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-14213259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.87E-17214263No hitNo description
SMARTSM003531.7E-17215264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MGWSNFEVTE LTWENGQLAM HELGGIFPPP TLTTPSTLKP IWEGGGVGVG GAGDTLESIV  60
NQAAYCSKQI ANPVVPATRQ AVQNMEHVGS VVASCGVKWA ENPRPLQKTG GPQNALGTVK  120
KRSRSETDRH HHGLANDYES ACASANAAVS VENNDTTMMT WSYESPRSST RTKTNNDDDS  180
ACQGGSENQE EERDIKGESG RSYTTRKGRA AAVHNQSERR RRDRINQKMK ALQKLVPNAS  240
KTDKASMLDE VIEYLKQLQA QLQMMNQVGF MPQMMMPLGM QQHLHQMSLL ARMGMGASLG  300
MGIGMLEPPS IGHSPQQPPQ PMPAMMHPNQ VAASASRFVS PPFVVPQMIA STQLTANSDH  360
GASSSAHLQD SYNTLLAQAI HEYRALQQDS SVTEAAAAAA DPVTTNEQSV TAK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1217222ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021761552.11e-146transcription factor PIF7-like
TrEMBLA0A0K9QNE11e-134A0A0K9QNE1_SPIOL; Uncharacterized protein
STRINGXP_010678431.11e-128(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61270.15e-32phytochrome-interacting factor7