PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca59672.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 266aa    MW: 29397.9 Da    PI: 6.8472
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca59672.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.44.5e-071151226
                TS--TTTTT-SS-SS CS
     zf-CCCH 12 tGtCkyGdrCkFaHg 26
                +G+Ck G++C+FaHg
  Dca59672.1  1 MGQCKNGESCNFAHG 15
                59************9 PP
2zf-CCCH29.81e-096891225
                -S---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                k++lC++++ + +C+yG+rC+F H
  Dca59672.1 68 KMKLCKRYYNGEECPYGERCNFLH 91
                789*******66************ PP
3zf-CCCH44.62.3e-14156182127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +kt++C+ f  tG+C++Gd+C+FaHg+
  Dca59672.1 156 WKTRICMKFETTGYCPFGDTCHFAHGQ 182
                 8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF006421.2E-4115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.638117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-8223IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-76693IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.2726694IPR000571Zinc finger, CCCH-type
SMARTSM003560.0146693IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-86892IPR000571Zinc finger, CCCH-type
PfamPF006427.0E-76891IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-16152185IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-10153185IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.094155183IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-7155182IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-12156182IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MGQCKNGESC NFAHGDDDLR QPPPNWQDLV SGRSDERGGS GGGNGNVNVN MNGTESWEEN  60
DDDRIIHKMK LCKRYYNGEE CPYGERCNFL HKDPPTKFRD VAPPPRFRDS SRESSAISIG  120
TTGPPMVLDN YEISRIAGNG NVNGDALRGN SRPVYWKTRI CMKFETTGYC PFGDTCHFAH  180
GQAELLLPGS RPADSEPTVG KSAPLKHVPP PASDPTLVKT GNVIHKSEIG LSKDPLLKWN  240
PTKKMNRIYG DWLDDLPLIS PNQVNC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021858419.11e-115zinc finger CCCH domain-containing protein 39
TrEMBLA0A0K9R3T91e-114A0A0K9R3T9_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010676669.11e-113(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.17e-60C3H family protein