PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca59609.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB_related
Protein Properties Length: 331aa    MW: 38046.4 Da    PI: 9.297
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca59609.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.7e-0976141145
                      TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHT..........TTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...........tWktIartmg..........kgRtlkqcksrwq 45 
                      r +W+  Ede lv a  q Gg+            WktI+++            k+Rtlk++ srw 
       Dca59609.1  76 RVKWSVKEDEALVSAYLQVGGDgkkgtnqskgdLWKTIMKMYEearddapstiKRRTLKSLTSRWE 141
                      789**************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.77171144IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.0E-571145IPR009057Homeodomain-like
SMARTSM007170.008575146IPR001005SANT/Myb domain
PfamPF143035.8E-8187313IPR029466No apical meristem-associated, C-terminal domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MFSNQYQQPS FQQQGFHPSS TLNIPPHSNQ TVDHSPGGNG SSNQALSEDL RDERQLENTN  60
NVVELFPEET NDRSARVKWS VKEDEALVSA YLQVGGDGKK GTNQSKGDLW KTIMKMYEEA  120
RDDAPSTIKR RTLKSLTSRW ETISRDVSRW VGVYAQAKRD KASGISDEDV ENHAHYLYQK  180
KYNGVRFTLM HAWKEMKHLR KWQAGNMEIP TESGGSSKRS QPDTAEDEEE IARPDGIKKA  240
KKKGKQAASS SVNMDAFTNA ISKMNVRTSN RELLGIQMLE YQRERDAAKA KQKEDDRQWQ  300
LFMFLMNKPH LEEDQQVSLT NLKEKFNYMF K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1232240RPDGIKKAK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-