PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca5879.1
Common NameDcGRAS1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family GRAS
Protein Properties Length: 575aa    MW: 64258.6 Da    PI: 6.6273
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca5879.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS426.81.7e-1302055741373
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                l++lL+ecA+a+s++     ++l+++ +  +s +g+p+qRl ay+ e+L ar ++s++++y+al+++e      ++ l+++++++e++P+lkf++++aN 
  Dca5879.1 205 LKQLLIECARALSENRIDDFEKLVEQAKGEVSISGEPIQRLGAYMIEGLVARTQSSGNNIYHALRCKEPL---GKDLLSYMHILYEICPYLKFGYMAANG 301
                689******************************************************************8...9************************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                aI ea  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  + ++le +g rL+ + e+ ++p+ef++ v     d++ e+L+v+p
  Dca5879.1 302 AIAEACRNEDRIHIIDFQIAQGTQWLTLLQALAKRPGGAPHVRITGIDDPISKyaRGTNLEPVGLRLKALSEKYQIPVEFHP-VPVFGPDVTREMLDVRP 400
                *************************************************99999999*************************.688899*********** PP

       GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                gEalaVn+ lqlh+++desv+++++rd++L++vksl+Pkv ++veqe+++n+++Fl+rf+e+leyysa+f+s++++++r+ +eri+vE+++l+++ivnv+
  Dca5879.1 401 GEALAVNFPLQLHHTPDESVDVNNPRDNLLRMVKSLNPKVTTLVEQESNTNTTPFLTRFIETLEYYSAMFESIDVTMARDRKERINVEQHCLAKDIVNVI 500
                **************************************************************************************************** PP

       GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                aceg+er+erhe ++kW++rl++aGF+++pls+++++ ++ llr ++ + y++ e++g+++lgWkdr L+s+SaW
  Dca5879.1 501 ACEGKERVERHELFGKWKSRLTMAGFRQYPLSSYVNSVIRGLLRCYS-EHYTLVEKDGAMLLGWKDRMLISASAW 574
                *******************************************9999.66************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.834179556IPR005202Transcription factor GRAS
PfamPF035146.0E-128205574IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MDSHQIFGYS VTGSDSTYIT AQCTPPSLPN KLFGPLKFSF RESPISPFSS QFDCDTLTTL  60
SDSKERLSST ESFSVKSSSC NSPLDNNNNN NNNYYNGLNS SPSIDSPQGP VYGVSMRHAL  120
QELETALMGD ETTPVSTPSM GGIRPTQLPT QRSRSWSRDP SVSQGGQVQS SSTSGGRRSE  180
DEGQSEKRHK SMEVLLQQSM PSGNLKQLLI ECARALSENR IDDFEKLVEQ AKGEVSISGE  240
PIQRLGAYMI EGLVARTQSS GNNIYHALRC KEPLGKDLLS YMHILYEICP YLKFGYMAAN  300
GAIAEACRNE DRIHIIDFQI AQGTQWLTLL QALAKRPGGA PHVRITGIDD PISKYARGTN  360
LEPVGLRLKA LSEKYQIPVE FHPVPVFGPD VTREMLDVRP GEALAVNFPL QLHHTPDESV  420
DVNNPRDNLL RMVKSLNPKV TTLVEQESNT NTTPFLTRFI ETLEYYSAMF ESIDVTMARD  480
RKERINVEQH CLAKDIVNVI ACEGKERVER HELFGKWKSR LTMAGFRQYP LSSYVNSVIR  540
GLLRCYSEHY TLVEKDGAML LGWKDRMLIS ASAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-6221157425378Protein SCARECROW
5b3h_A2e-6221157424377Protein SCARECROW
5b3h_D2e-6221157424377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021725970.10.0chitin-inducible gibberellin-responsive protein 1-like
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLD4QD660.0D4QD66_DIACA; GRAS family transcription factor
STRINGXP_010694285.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.11e-174scarecrow-like 5
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  2. Harada T,Torii Y,Morita S,Masumura T,Satoh S
    Differential expression of genes identified by suppression subtractive hybridization in petals of opening carnation flowers.
    J. Exp. Bot., 2010. 61(9): p. 2345-54
    [PMID:20308205]