PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca58563.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 363aa    MW: 40570.6 Da    PI: 6.4886
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca58563.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.95.7e-06528226
                -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                ++ lC+ffa  G C  G+ C FaH+
  Dca58563.1  5 DRILCKFFAH-GACLKGPHCEFAHD 28
                6779**6666.*************5 PP
2zf-CCCH27.65.2e-093656526
                --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                +C f+++ G C yG+rC++ H+
  Dca58563.1 36 ICTFYQK-GVCAYGARCRYDHV 56
                7******.*************7 PP
3zf-CCCH192.4e-06144166326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                 ++lC+ fa  G C++Gd+C+  Hg
  Dca58563.1 144 QVLCS-FALAGNCPRGDKCPHLHG 166
                 57999.*************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.662330IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-4429IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-7528IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1083158IPR000571Zinc finger, CCCH-type
SMARTSM003560.00253257IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-53455IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-43655IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-63656IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.929141168IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-4142167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-4146166IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.68E-12200274No hitNo description
Gene3DG3DSA:3.30.40.102.3E-9203269IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00522209269No hitNo description
PfamPF000978.7E-6210267IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008911.693210268IPR001841Zinc finger, RING-type
SMARTSM001845.3E-7210267IPR001841Zinc finger, RING-type
PROSITE patternPS005180234243IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.015297325IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.939297326IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MSDPDRILCK FFAHGACLKG PHCEFAHDWT APPNNICTFY QKGVCAYGAR CRYDHVKVSR  60
PESSCASSSS SSSSTASVAP ANTLGSPFYT LQSQLSPSSR STLLSSPSKV AWEDPVISEE  120
DNDDYDDDDD DVFPEPRSQN PADQVLCSFA LAGNCPRGDK CPHLHGDLCP TCGKLCLHPF  180
RPKERDDHSR TCIQRHKHLE ALKRSQDIEC SVCLERVLFK PKPSDRKFGL LSECDHPFCI  240
SCIRVWRSSS PSSGMDVNTT LRACPICRKL SYFVIPSVIW YFSQEEKDEI VNSYKGKLKS  300
IDCKYFDFGN GSCPFGTSCF YKHSYHDGTL EEVILRHLDA ADGETVIAKD IRLSEFLSNL  360
QIS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021860995.11e-180putative RING-type E3 ubiquitin transferase C3H69
RefseqXP_021860996.11e-180putative RING-type E3 ubiquitin transferase C3H69
SwissprotE0X9N41e-161C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
TrEMBLA0A0K9QYM61e-179A0A0K9QYM6_SPIOL; Uncharacterized protein
STRINGXP_010695330.11e-178(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-120C3H family protein
Publications ? help Back to Top
  1. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]