PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca5833.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 348aa    MW: 37752.5 Da    PI: 8.4027
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca5833.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.11.2e-12252277126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +ktelC+ ++ t  C+yGd C+FaHg
  Dca5833.1 252 FKTELCNKWQDTRNCPYGDHCQFAHG 277
                79***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.0E-17248284IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-10248283IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-6251278IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.971251279IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-10252277IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-11285314IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-8286315IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-4289316IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.878289317IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MQHEIPNISS AVTPNIRRMS PVNGLSRIVF SQPNSSNFDQ FSASPTPLSM TSADSTTTAM  60
IAVAYLSQLM SRHKDLMNRF CSCALQLKNT IHEVKTLQLE NVNLRIANRE LSHQISVLLK  120
AAELQTAAAA VAAAAARSET QQLAGVGQSS SEKSTSMSPT SETVNETGRV SLPKSISVRS  180
SDYLKLKSSG ADDSSGSSSE AKPKPKRASS SKTHVLSPLS GSLYSLQQKV RVGGGSKNDG  240
PIELEVFNQG MFKTELCNKW QDTRNCPYGD HCQFAHGIKE LRPVIRHPRY KTEVCRMVLS  300
GDPCPYGHRC HFRHALTPEE KLLLSTDTEA ADSSEAETAD STDTAPIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A7e-21252314466Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021844986.17e-87zinc finger CCCH domain-containing protein 15
TrEMBLA0A0K9QNV42e-85A0A0K9QNV4_SPIOL; Uncharacterized protein
STRINGXP_010681714.16e-80(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.12e-55C3H family protein