PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca58211.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | SRS | ||||||||
Protein Properties | Length: 346aa MW: 35558.9 Da PI: 7.8704 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 204.5 | 3e-63 | 132 | 292 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkqsalsstklssaeskke 99 sgta+CqdCGnq+kkdC+h+RCRtCC+srgfdC+thvkstW+paa+rrerq+ + ++ ++ +++ +k++r +s+++s +s+++++ +++ Dca58211.1 132 SGTATCQDCGNQSKKDCSHQRCRTCCRSRGFDCSTHVKSTWIPAARRRERQAITGTSGGGGGGASsgSTSGAKKPRLVSSQTSSHTSTSNTP----PRS 226 7899***********************************************99998877665555336666677776644444444443333....334 PP DUF702 100 letss...........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++ss lP +v+++avf+cv+v++v+dge+e+aYq++v+i+Gh+fkG+LydqG+e+ Dca58211.1 227 FDASSshhqdgsyketLPGQVRAPAVFKCVKVTAVEDGEDEFAYQAVVKINGHLFKGFLYDQGVES 292 4444344558888999***********************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.8E-59 | 134 | 291 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.6E-25 | 136 | 178 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 7.8E-28 | 243 | 290 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MWPTSSSRVG YGVVPPEMSM FVVAAAGPAT TFHHHHYSGG GGSGGGGGGG TLMSHHQHQH 60 HHPSDYMNQT GGGGDGNNTA TTLGVGVIPL LGAADEQDLI GRTAWQQQLG TTMGKNKSID 120 FELPTSSGMT VSGTATCQDC GNQSKKDCSH QRCRTCCRSR GFDCSTHVKS TWIPAARRRE 180 RQAITGTSGG GGGGASSGST SGAKKPRLVS SQTSSHTSTS NTPPRSFDAS SSHHQDGSYK 240 ETLPGQVRAP AVFKCVKVTA VEDGEDEFAY QAVVKINGHL FKGFLYDQGV ESSRDGFPNL 300 SELHLGGSSG GGGGRHGPLL DTSDVYGASG GGGGLIGGSS YGNTIN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019434791.1 | 3e-99 | PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like | ||||
Swissprot | Q94CK9 | 1e-75 | LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | A0A4P1RRK4 | 7e-98 | A0A4P1RRK4_LUPAN; Uncharacterized protein | ||||
STRING | XP_009796421.1 | 3e-95 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.2 | 8e-65 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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