PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca58130.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

G2-like

Protein Properties

Length: 201aa MW: 22759.9 Da PI: 8.5043

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca58130.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.6	2.7e-33	31	85	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPk+il++m+vkgLtl h+kSHLQkYRl Dca58130.1 31 KPRLRWTAELHERFVDAVTQLGGPNKATPKAILRTMGVKGLTLFHLKSHLQKYRL 85 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.7E-32	28	86	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.57	28	88	IPR017930	Myb domain
TIGRFAMs	TIGR01557	7.9E-25	31	86	IPR006447	Myb domain, plants
SuperFamily	SSF46689	2.33E-17	31	87	IPR009057	Homeodomain-like
Pfam	PF00249	8.8E-9	33	84	IPR001005	SANT/Myb domain
Pfam	PF14379	1.0E-15	130	174	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MDEMHHHQIV GPMTHNTQTG DPRLVLTSDP KPRLRWTAEL HERFVDAVTQ LGGPNKATPK 60 AILRTMGVKG LTLFHLKSHL QKYRLGKQSG KDMIGDASKD GITAMYQLES PRTSNSSTSL 120 PTSDMDEGYK VKEALRTQME VQTKLHLQVE AEKHLQLRQD AERRYMAMLE RACKILTDQL 180 MEVSISDNHT HPLQGHTSDL N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-20	31	87	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-20	31	87	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-20	31	87	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-20	31	87	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021749031.1	1e-111	protein PHR1-LIKE 2-like isoform X1
Swissprot	Q8LAJ7	3e-63	PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBL	A0A0K9RJS6	1e-107	A0A0K9RJS6_SPIOL; Uncharacterized protein (Fragment)
STRING	XP_010673278.1	1e-107	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	1e-65	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]