PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca5787.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 208aa    MW: 22769.2 Da    PI: 5.8898
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca5787.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.31.8e-0535563354
               .TTS-STCHHHHHHHHHHHHHH CS
        HLH 33 apskKlsKaeiLekAveYIksL 54
               ++ +K +K+++Le A+eY+ksL
  Dca5787.1 35 PKIPKTDKSSMLEDAIEYLKSL 56
               57789***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.47E-43561No hitNo description
SuperFamilySSF474591.57E-53876IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-53965IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MQPLYEGLKR PPSQQLQIPD PKEATRKYNY DNIRPKIPKT DKSSMLEDAI EYLKSLKMQA  60
QGIQQPYMPP PMGMGMYMGL GMDLGMTRPL VPYAPMTPPP PSLPSPPATN IVSPLASRTA  120
VIPYAVPLVL SAQHSVDQTS IPANSSGSSY VVPTPEMTPN MVSSCQQYLT YMQMQMQMQA  180
AQMFSQPGSS KPDAIKSVGD NGNNDDTE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-