PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca5773.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB_related
Protein Properties Length: 281aa    MW: 31678.6 Da    PI: 5.1093
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca5773.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.81.9e-112341145
                     HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     +lv a+k +G++ W+ Ia++++ gRt++ +k++++
        Dca5773.1  2 RLVAAHKVFGNR-WAEIAKHIP-GRTDNTIKNYFN 34
                     89**********.*********.**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.789141IPR017930Myb domain
SMARTSM007170.0017139IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-13235IPR009057Homeodomain-like
SuperFamilySSF466898.58E-9243IPR009057Homeodomain-like
PfamPF002495.7E-9234IPR001005SANT/Myb domain
CDDcd001677.30E-8337No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MRLVAAHKVF GNRWAEIAKH IPGRTDNTIK NYFNATKRRQ TRRMKETTNG NSKGFKQPSI  60
LQLYTDSLSS SSNNASTRKR STATTATLKR MLPTNSKAAD ISRDDSPSQY GNIPPLCPSS  120
NNEHNFQSLN NSNNSPLFVT NPSNNNNEVV VVNMQQPSMI NNNNHHLNGG YTPTYDFQFI  180
DEPNDDSLST LMDLLRSLDP NEICEDNNDY QQIQNININN NISTNTTSSN SSNNNSNNGL  240
PDIPMVDSQP YDQEEYNEDI FSSEKFEEDM AFLHNLMSLL P
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.12e-14myb domain protein 119