PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca57560.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | WRKY | ||||||||
Protein Properties | Length: 215aa MW: 23689.9 Da PI: 10.7658 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 34.3 | 4.8e-11 | 191 | 213 | 3 | 25 |
-SS-EEEEEEE--TT-SS-EEEE CS WRKY 3 DgynWrKYGqKevkgsefprsYY 25 D y+WrKYGqK++kgs++pr Y Dca57560.1 191 DDYSWRKYGQKPIKGSPHPRYVY 213 99******************877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.1E-16 | 148 | 187 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 2.1E-11 | 177 | 213 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 13.104 | 184 | 215 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.89E-9 | 186 | 213 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.0E-8 | 191 | 213 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MALDFMVNNN SRTASSLDEA VVHEASAGLR SVHNFLQLLS LPEISPSFRN ANNNNDNNYT 60 KSTAVVEIDR NCRAVADDAV SRFRNVISLL GRARSGHARF RRGPGPGPAR NGVVLCPDPI 120 QQVKDYSGVI TSVGRPPLSH TTSFKGRKCV SEHGKCGSSG RCHCSKKRKT KLKRTVRIPA 180 ISTKMADIPP DDYSWRKYGQ KPIKGSPHPR YVYTT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007205552.1 | 4e-58 | probable WRKY transcription factor 7 | ||||
TrEMBL | M5W056 | 9e-57 | M5W056_PRUPE; Uncharacterized protein | ||||
STRING | EMJ06751 | 1e-57 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23320.2 | 1e-28 | WRKY DNA-binding protein 15 |