PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca57391.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family C3H
Protein Properties Length: 343aa    MW: 37147.8 Da    PI: 8.406
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca57391.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.11.2e-12247272126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +ktelC+ ++ t  C+yGd C+FaHg
  Dca57391.1 247 FKTELCNKWQDTRNCPYGDHCQFAHG 272
                 79***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.89E-10243278IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-17243279IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.971246274IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-6246273IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-10247272IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-11280309IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-8281310IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.878284312IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-4284311IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MQHEIPNISS AVTPNIRRMS PVNGLSRIVF SQPNSSNFDQ FSASPTPLSM TSADSTTTAM  60
IAVAYLSQLM SRHKDLMNRF CSCALQLKNT IHEVKTLQLE NVNLRIANRE LSHQISVLLK  120
AAELQTAAAA VAAAAARSET QQLAGVGQSS SEKSTSMSPT SETVNETGRV SLPKSISVRS  180
SDYLKLKSSG ADDSSGSSSE AKPKPKRASS SKTHVLSPLS GSQKVRVGGG SKNDGPIELE  240
VFNQGMFKTE LCNKWQDTRN CPYGDHCQFA HGIKELRPVI RHPRYKTEVC RMVLSGDPCP  300
YGHRCHFRHA LTPEEKLLLS TDTEAADSSE AETADSTDTA PIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A8e-21247309466Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021844986.12e-89zinc finger CCCH domain-containing protein 15
TrEMBLA0A0K9QNV45e-88A0A0K9QNV4_SPIOL; Uncharacterized protein
STRINGXP_010681714.12e-82(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.16e-55C3H family protein