PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca57089.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family NF-X1
Protein Properties Length: 519aa    MW: 56736.6 Da    PI: 8.2281
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca57089.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X117.21.1e-05186204120
    zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                 CG H C  lCH+GpCp+Cp+
  Dca57089.1 186 CG-HNCLLLCHPGPCPSCPK 204
                 **.***************96 PP
2zf-NF-X1248.5e-08238257120
    zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                 CG H+C+++CHeG+CppC++
  Dca57089.1 238 CGVHSCGEICHEGECPPCRE 257
                 ******************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578503.71E-773147No hitNo description
PROSITE patternPS01359074140IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500898.8974141IPR001841Zinc finger, RING-type
CDDcd060085.93E-6174213No hitNo description
PfamPF014220.0012186203IPR000967Zinc finger, NF-X1-type
SMARTSM004380.016186204IPR000967Zinc finger, NF-X1-type
CDDcd060083.43E-9228276No hitNo description
PfamPF014227.1E-5238256IPR000967Zinc finger, NF-X1-type
SMARTSM004383.8E-4238257IPR000967Zinc finger, NF-X1-type
CDDcd060087.35E-9281320No hitNo description
PfamPF014220.14291309IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0055291310IPR000967Zinc finger, NF-X1-type
SMARTSM0043856403423IPR000967Zinc finger, NF-X1-type
PfamPF014223412422IPR000967Zinc finger, NF-X1-type
PfamPF01422140431440IPR000967Zinc finger, NF-X1-type
SMARTSM00438160431476IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MASHQCMSSD TSDYDSDTGA AATTTTNHRH ADLTTTIFKA YFEINGHDSS TTSPHDLSKI  60
QSFLNSSTSG ALSCLICLEK IKPVDPTWSC VGACFDVFHL HCIQSWAQQS TSRAATRALT  120
RLPVSAETAE AASVWNCPKC RFEYPKYLIP KNYYCFCGKL ENPCYDPWIL PHSCGEICGR  180
LLRNDCGHNC LLLCHPGPCP SCPKLVKSRC FCGGFEDVRR CGFKEFSCGK KCNRVLGCGV  240
HSCGEICHEG ECPPCREKAV YACQCGLVKD ERECCDRVFR CENPCGRGLE CGKHVCERGC  300
HGGKCGPCPF QGRRSCPCGK QVHEGMSCDA EVPLCGSTCD KKLSCGRHRY LVIKIWCVKG  360
NARGNVIVVV TLAGVAAVTG TVHRVQRGPC APCPLMVTIS CACGSTRFEP HKCHYGACPP  420
CKLPCGEEYP CGHACKLRCH GPRPPPNPEF TLKPTKKKRY YPSEPTPGTP CPPCPELVWR  480
SCVGQHFAAE KMVGKGRHRV HIHVPGSATP VNVLRAKFS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021732473.10.0LOW QUALITY PROTEIN: NF-X1-type zinc finger protein NFXL2-like
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A0K9RJJ40.0A0A0K9RJJ4_SPIOL; Uncharacterized protein
STRINGXP_010689644.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.11e-146sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors