PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca5706.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | MYB | ||||||||
Protein Properties | Length: 252aa MW: 29382.8 Da PI: 6.7917 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46 | 1.2e-14 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +l + v ++G ++W+ Ia+ g++Rt+k+c++rw +yl Dca5706.1 8 KGPWTEQEDIQLDCFVGLFGDRRWDFIAKVSGLKRTGKSCRLRWVNYL 55 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 56.1 | 8.7e-18 | 61 | 106 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E++l+++++ q+G++ W++Iar+++ gRt++++k++w++++ Dca5706.1 61 RGKMTPNEEKLILELHSQWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 106 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.396 | 3 | 55 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.12E-28 | 6 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-13 | 7 | 57 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-13 | 8 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-19 | 9 | 62 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.27E-9 | 10 | 55 | No hit | No description |
PROSITE profile | PS51294 | 25.798 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 9.1E-16 | 60 | 108 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-16 | 61 | 105 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.44E-11 | 63 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.1E-24 | 63 | 109 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MVQDEVRKGP WTEQEDIQLD CFVGLFGDRR WDFIAKVSGL KRTGKSCRLR WVNYLHPGLK 60 RGKMTPNEEK LILELHSQWG NRWSRIARRL PGRTDNEIKN YWRTHMRKQA QEKKRGISTS 120 SSSLANSSFS SDSAAVNSMT TTETSSMSHS TEAPDRSALR EKKHKKDENK KEEEFYSMDD 180 IWKDITSDEE QIKPFYDGYS EESFLSCPPM VSPLWEYCPD TFWRLEEDGS KILFSANDTF 240 VPSHQNEYAS NL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-26 | 5 | 110 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021865245.1 | 1e-126 | transcription factor MYB59 isoform X1 | ||||
Swissprot | Q9LX82 | 1e-84 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | A0A438G1I0 | 1e-108 | A0A438G1I0_VITVI; Transcription factor MYB59 | ||||
TrEMBL | F6GV45 | 1e-108 | F6GV45_VITVI; Uncharacterized protein | ||||
STRING | XP_010685834.1 | 1e-113 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.1 | 8e-79 | myb domain protein 48 |
Publications ? help Back to Top | |||
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