PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca57004.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ERF
Protein Properties Length: 332aa    MW: 37340.4 Da    PI: 4.462
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca57004.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.2e-19127176255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a +++++g
  Dca57004.1 127 QYRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 176
                 69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.76E-34127185No hitNo description
Gene3DG3DSA:3.30.730.101.7E-32127186IPR001471AP2/ERF domain
SMARTSM003805.7E-38127190IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-23127186IPR016177DNA-binding domain
PROSITE profilePS5103224.566127184IPR001471AP2/ERF domain
PRINTSPR003671.2E-11128139IPR001471AP2/ERF domain
PfamPF008478.2E-12128176IPR001471AP2/ERF domain
PRINTSPR003671.2E-11150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MCGGSILSSF KPDVNSRKNA ENFLYGGDLS TKIKGYSKPL KSINVEVCNY DSDYDYDDDD  60
VKFEADFMEF KDDDVDDDEL FLVGKSDFIT TVNNSSMIKS FSPSNDLNPV EADAQIGKLP  120
KKKRKNQYRG IRRRPWGKWA AEIRDPRKGV RVWLGTFNTA EEAARAYDAE ARRIRGKKAK  180
LNFPDEAPPS SANTAKSRRS NAIIDSDTLF DNDYSIADEK SDTTTAISEV ENRPKTQEIS  240
SLVSPVLEIE ENLIAENGNA NKRMRLSSEN AVLTEEPCNA DFESHMRMFE TPFVDNDWAM  300
EPFLTGCATQ DGLNLVNLWS FDDFPAMSAG IF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-221261861374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120134KKKRKNQYRGIRRRP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021720392.17e-83ethylene-responsive transcription factor RAP2-12-like
RefseqXP_021720393.17e-83ethylene-responsive transcription factor RAP2-12-like
TrEMBLB6UZ631e-74B6UZ63_9CARY; Dehydration-responsive element binding protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.31e-27related to AP2 2