PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca56963.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 372aa    MW: 42366 Da    PI: 5.4855
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca56963.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.4e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l++ ++ +G g+W++ ++  g++R++k+c++rw +yl
       Dca56963.1 14 KGPWTPEEDHKLLRFIENHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding551.9e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ eE++ ++++++ lG++ W++Ia +++ gRt++++k++w+++l
       Dca56963.1  67 RGKFSSEEEQTILNLHAILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-25564IPR009057Homeodomain-like
PROSITE profilePS5129417.378961IPR017930Myb domain
SuperFamilySSF466898.24E-3111108IPR009057Homeodomain-like
SMARTSM007171.5E-131363IPR001005SANT/Myb domain
PfamPF002499.9E-171461IPR001005SANT/Myb domain
CDDcd001674.00E-101661No hitNo description
PROSITE profilePS5129426.5362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2765117IPR009057Homeodomain-like
SMARTSM007172.4E-1666114IPR001005SANT/Myb domain
PfamPF002494.4E-1667112IPR001005SANT/Myb domain
CDDcd001672.02E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MGRSPCCDEN GLKKGPWTPE EDHKLLRFIE NHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SSEEEQTILN LHAILGNKWS AIATHLPGRT DNEIKNFWNT HLKKKLIQMG  120
FDPMTHRPRT DIFTSLPHLI ALANLKELVE TNSCDDQAMK LQTEVAKLQY LQYLLQPPTS  180
NYPMPNLDMN TLNLLNTLPS SFDNNIKDNH FYNNINNNDN DNDNDNDNEN NNNNTNNNTN  240
LYNNLFDDMH DHLPNLKNDM DNNSIDLTKD NNHIIHNNHD NYHNNLSNMI SDNNHMVVDP  300
CEFTILTLER ENTTSSSPTS PPWLPSLSTS PSPPPPQPTT TATTAVETST SGCGGFWPDI  360
LLEDSLFQDI TL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-28121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00180DAPTransfer from AT1G34670Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680536.11e-143PREDICTED: transcription factor MYB39
SwissprotQ9SBF31e-101MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A1S4AAN71e-125A0A1S4AAN7_TOBAC; transcription factor MYB39-like
TrEMBLA0A1U7WN211e-125A0A1U7WN21_NICSY; transcription factor MYB39-like
STRINGXP_010680536.11e-143(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.14e-97myb domain protein 93
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]