PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca5689.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family Dof
Protein Properties Length: 435aa    MW: 47010.3 Da    PI: 8.6039
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca5689.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.66.4e-3991150463
     zf-Dof   4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                  +kcprCdstntkfCyynnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+sss
  Dca5689.1  91 VPQKCPRCDSTNTKFCYYNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSSS 150
                5689****************************************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-2873138IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.53493147IPR003851Zinc finger, Dof-type
PfamPF027012.0E-3293147IPR003851Zinc finger, Dof-type
PROSITE patternPS01361095131IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MAFSSSVPLY LDPPNWQQHP NNHQQQQQQQ QLHNEQIQQH HFISQQQQQQ QQQQQVGSIG  60
PGPGPGPGAQ QIRANSMAER ARLAKIPPPE VPQKCPRCDS TNTKFCYYNN YSLSQPRHFC  120
KTCRRYWTRG GALRNVPVGG GCRRNKRSSS SNKSSSGSGA TSAKSAGVAP SLGADSIIRG  180
INVNTLGEMI NSANGNGNNN NNNNNNSNNN NPLSFMASLQ NIAHLGGISG SRLNFNGGPI  240
NNIHNNSNTT TPLLAGVGGI GGGGVGGYNL EFPPPQQQQQ MHQFPNFLGG FEIPGSSIGG  300
GGLIYSQFQN VNHHRHSNNE DEHHEHHHEE LNVDNRVSLS KSSNISSMVS PVKMEDNNNV  360
QQQQQQQQQG LNLAKQLMMG IASPNDDESN NNSNVTGNNS SQFWGGNMAN TGGVGVTSMW  420
TDLSGLNSSS TSHLL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00407DAPTransfer from AT3G55370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010685788.19e-87PREDICTED: dof zinc finger protein DOF2.4 isoform X1
STRINGXP_010685788.14e-86(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.12e-35OBF-binding protein 3