PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca5689.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | Dof | ||||||||
Protein Properties | Length: 435aa MW: 47010.3 Da PI: 8.6039 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.6 | 6.4e-39 | 91 | 150 | 4 | 63 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +kcprCdstntkfCyynnyslsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+sss Dca5689.1 91 VPQKCPRCDSTNTKFCYYNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSSS 150 5689****************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 8.0E-28 | 73 | 138 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.534 | 93 | 147 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 2.0E-32 | 93 | 147 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 95 | 131 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 435 aa Download sequence Send to blast |
MAFSSSVPLY LDPPNWQQHP NNHQQQQQQQ QLHNEQIQQH HFISQQQQQQ QQQQQVGSIG 60 PGPGPGPGAQ QIRANSMAER ARLAKIPPPE VPQKCPRCDS TNTKFCYYNN YSLSQPRHFC 120 KTCRRYWTRG GALRNVPVGG GCRRNKRSSS SNKSSSGSGA TSAKSAGVAP SLGADSIIRG 180 INVNTLGEMI NSANGNGNNN NNNNNNSNNN NPLSFMASLQ NIAHLGGISG SRLNFNGGPI 240 NNIHNNSNTT TPLLAGVGGI GGGGVGGYNL EFPPPQQQQQ MHQFPNFLGG FEIPGSSIGG 300 GGLIYSQFQN VNHHRHSNNE DEHHEHHHEE LNVDNRVSLS KSSNISSMVS PVKMEDNNNV 360 QQQQQQQQQG LNLAKQLMMG IASPNDDESN NNSNVTGNNS SQFWGGNMAN TGGVGVTSMW 420 TDLSGLNSSS TSHLL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00407 | DAP | Transfer from AT3G55370 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010685788.1 | 9e-87 | PREDICTED: dof zinc finger protein DOF2.4 isoform X1 | ||||
STRING | XP_010685788.1 | 4e-86 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55370.1 | 2e-35 | OBF-binding protein 3 |