PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca56491.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bHLH
Protein Properties Length: 323aa    MW: 35203.1 Da    PI: 4.5289
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca56491.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.50.000132562773455
                 TTS-STCHHHHHHHHHHHHHHH CS
         HLH  34 pskKlsKaeiLekAveYIksLq 55 
                 +++  + a++Le+A+eY+ksLq
  Dca56491.1 256 THTETDRASMLEEAIEYMKSLQ 277
                 5778899**************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.95E-5253284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00151254281No hitNo description
Gene3DG3DSA:4.10.280.101.4E-5256281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MSHDVPDFEL ENEDYNIPST STLAKHSADD EIMELLWQNN APVAVNMSSW LHYPIEEFYN  60
EFLYTNPNTS VPPPTAVIRP PPENHQLPPP SPGSWPENHP PMPPQPPPAR WSIPPTRGFP  120
LFSRMVGSRA VEPQLPRLMS LSTVVDSNDT PISSSGTATL AASCPVESVV VTSSTPKPIP  180
SVRQSLEIEE GGKDESKTST SSSSANNSST VGAAVTTQSE TGLRTVTSEV VDRKRKSREV  240
EESFTTTTAA TTAVDTHTET DRASMLEEAI EYMKSLQMQV QVCSLIAYLG LLPTLQLDEA  300
DSHRESRRSH NDNAGSCHVA IVP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-