PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca56351.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

GATA

Protein Properties

Length: 538aa MW: 59508.6 Da PI: 7.5655

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca56351.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	47.4	2.6e-15	7	41	1	35
GATA 1 CsnCgttkTplWRrgp.dgnktLCnaCGlyyrkkgl 35 C +Cg+ +TplWR+gp d+++ LCnaCG ++r kg+ Dca56351.1 7 CYHCGVASTPLWRNGPpDKPI-LCNACGSRWRTKGT 41 **************77777.*********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	2.4E-9	1	55	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	4.04E-11	4	46	No hit	No description
CDD	cd00202	1.64E-15	6	51	No hit	No description
Gene3D	G3DSA:3.30.50.10	7.0E-12	7	41	IPR013088	Zinc finger, NHR/GATA-type
PROSITE profile	PS50114	10.976	7	40	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	3.4E-13	7	41	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence Send to blast
MGKHGPCYHC GVASTPLWRN GPPDKPILCN ACGSRWRTKG TLINYTPLHS RVDPDDSEEQ 60 RALRLKSISL KKKDEKLYKR KLNYENTMAM DGEFTPDYGH GYQKNIDEDT SNRSSSGSAV 120 SNSESYAQFG SADAGELTGP SQSIVWDALI PSRKRTCVIR AKQSSVEKLT KDLHTILHEQ 180 ASQFSRSSEE DLLYESDAPM VSVEIGHGSV LIRHPSSMAR EEESEASSLS VDTKLCKSDE 240 RRSNAVSLPL LNDSKVVKTS VSRVEDVRKL NGQIVQLGQL QKDKHNHEKF QVLCNHNSPL 300 SHIDLTEIAN FDVFRGHLTA TEQQGLLKHL PSVDTSVGSN SLENMFTSAQ IKENLSSFQQ 360 LLTDGVLETS TPGIKTDDCK DLRRLALSNP SKCKWVERYN ILKQKGAEES TKERPSKSGA 420 KSGFSGTVLS ATRFRENHNH TGNELKCTMK SPKIVLPKVD YKQKAPLQNE PSYFASRSAF 480 SFPTDASSLL LDPEDDQDIL LDIPSNGSFP QAELLCPTSS FVSRQASTSS SSIRPSLA

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence Send to blast

MGKHGPCYHC GVASTPLWRN GPPDKPILCN ACGSRWRTKG TLINYTPLHS RVDPDDSEEQ  60
RALRLKSISL KKKDEKLYKR KLNYENTMAM DGEFTPDYGH GYQKNIDEDT SNRSSSGSAV  120
SNSESYAQFG SADAGELTGP SQSIVWDALI PSRKRTCVIR AKQSSVEKLT KDLHTILHEQ  180
ASQFSRSSEE DLLYESDAPM VSVEIGHGSV LIRHPSSMAR EEESEASSLS VDTKLCKSDE  240
RRSNAVSLPL LNDSKVVKTS VSRVEDVRKL NGQIVQLGQL QKDKHNHEKF QVLCNHNSPL  300
SHIDLTEIAN FDVFRGHLTA TEQQGLLKHL PSVDTSVGSN SLENMFTSAQ IKENLSSFQQ  360
LLTDGVLETS TPGIKTDDCK DLRRLALSNP SKCKWVERYN ILKQKGAEES TKERPSKSGA  420
KSGFSGTVLS ATRFRENHNH TGNELKCTMK SPKIVLPKVD YKQKAPLQNE PSYFASRSAF  480
SFPTDASSLL LDPEDDQDIL LDIPSNGSFP QAELLCPTSS FVSRQASTSS SSIRPSLA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021765789.1	0.0	GATA transcription factor 26-like
TrEMBL	A0A0K9R967	0.0	A0A0K9R967_SPIOL; Uncharacterized protein
STRING	XP_010677131.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-114	GATA transcription factor 26