PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca56149.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | MYB | ||||||||
Protein Properties | Length: 215aa MW: 24995.2 Da PI: 9.82 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.8 | 3e-19 | 31 | 78 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd+ l+++++ +G g+W++ ar+ g++Rt+k+c++rw++yl Dca56149.1 31 RGPWTVEEDLALINYITTHGEGRWNSLARCAGLKRTGKSCRLRWLNYL 78 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.6 | 9.4e-16 | 84 | 127 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE++ +++++ ++G++ W++Ia++++ gRt++++k++w++ Dca56149.1 84 RGKITLEEQLMILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 127 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.827 | 26 | 82 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.26E-31 | 28 | 125 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-15 | 30 | 80 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-16 | 31 | 78 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.0E-23 | 32 | 85 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.94E-11 | 33 | 78 | No hit | No description |
PROSITE profile | PS51294 | 18.137 | 83 | 133 | IPR017930 | Myb domain |
SMART | SM00717 | 7.4E-14 | 83 | 131 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 84 | 127 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.4E-23 | 86 | 132 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.41E-9 | 88 | 127 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MNINNIRSSS SSSEKKSEIT QNSDDEMDLR RGPWTVEEDL ALINYITTHG EGRWNSLARC 60 AGLKRTGKSC RLRWLNYLRP DVRRGKITLE EQLMILELHS RWGNRWSKIA QYLPGRTDNE 120 IKNYWRTRVQ KHAKQLKCDV NSKQFKDTMR YLWMPRLIER IQAASSTTVT TTTPTASTTT 180 VECSELNQSI NLATSNNNAF HAHEPNVGWM LEPFY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-26 | 28 | 125 | 24 | 120 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011027944.1 | 1e-100 | PREDICTED: transcription factor MYB108-like | ||||
Swissprot | Q9FGY3 | 7e-89 | MYB78_ARATH; Transcription factor MYB78 | ||||
TrEMBL | A0A426Y7Z6 | 8e-97 | A0A426Y7Z6_ENSVE; Uncharacterized protein (Fragment) | ||||
STRING | XP_006488792.1 | 8e-97 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 2e-86 | myb domain protein 78 |
Publications ? help Back to Top | |||
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