PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca5575.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

Nin-like

Protein Properties

Length: 883aa MW: 96840 Da PI: 6.8812

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca5575.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.8	5e-29	561	612	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+le+l+++F++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++ Dca5575.1 561 AEKTITLEVLRQHFAGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKV 612 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.37	551	632	IPR003035	RWP-RK domain
Pfam	PF02042	1.0E-25	564	612	IPR003035	RWP-RK domain
SuperFamily	SSF54277	9.08E-25	779	871	No hit	No description
PROSITE profile	PS51745	24.865	786	869	IPR000270	PB1 domain
SMART	SM00666	4.7E-26	786	869	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	6.1E-22	787	866	No hit	No description
Pfam	PF00564	1.3E-18	788	868	IPR000270	PB1 domain
CDD	cd06407	9.62E-43	788	867	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 883 aa Download sequence Send to blast
MDGSVFGSNV AVGGPSDTAM ELDYMDELLL EGCWLETIDG SFHESRGASE TVEDRSMVES 60 PVGGLVNKSN CHSLVSVLSE SDQCEKLFAD KSELNRVFWI KPRLSATVSS VMDRLFKAIT 120 YIKDSHRGRE TLIQIWVPVD QGGTRVLTTI DQPFSLNKGN AQLANYRNIS LNYQFAAEQD 180 SGLSVGLPGR VFLGKVPEWS PDVRFFRVDE YPRVPYAQQC DVRGTIALPV FEQGSKQCLG 240 VLEVVMTTQK VNYRSELESV CKALEAVHLR SSESLTPQKA KECTSSYHVA LPEILDVLKS 300 ACGSHGLPLA QTWVPCVQQG KEGCRHSDDN LSLCVSTIDS ACYIADPGMR GFHEACSEHH 360 LFKGEGVAGK AFLTNQPCFS PDITSYSKTE YPLSHHARMF GLSASVAIRL RSVYTGTSDF 420 VLEFFLPPGC RDPEVQKSML SSLSIIIQRV CRRLRVVTDE ELKEEALVLD NKVTVSLDGP 480 LQGKTMSDNE NTRSGSSQEE SCGDGVTQFD KGKAVLAQKP LPRLPQEFNA KLSPGATVEY 540 STVGGNASTA VRSGDKKRAK AEKTITLEVL RQHFAGSLKD AAKSIGVCPT TLKRICRQHG 600 IKRWPSRKIK KVGHSLQKLQ VVIDSVHGAS GAFQIGSFYS NFPDLASPNT TSGTSPFPTG 660 NQFHAPQATG LEPEGGPVSP RSATSKSPSS SCSQSSSSSQ FCSSGTQQQP STWNVSGNED 720 PHGGVTSNEG SIKRGRSEAE LQIPYQEPTS LISGSLSQRS LVEQYNPDAR PPLPKNVGQF 780 TQEGDFWRVK VTYGEEKIRF RMLKSWRFID LVQEVVRRFN IGDMGGFHIK YLDDDSEWVL 840 LTCDADLEEC IDICRSSQRQ TIKLSLQVSH SHSRSSVGSN SHL

Sequence ? help Back to Top

Protein Sequence Length: 883 aa Download sequence Send to blast

MDGSVFGSNV AVGGPSDTAM ELDYMDELLL EGCWLETIDG SFHESRGASE TVEDRSMVES  60
PVGGLVNKSN CHSLVSVLSE SDQCEKLFAD KSELNRVFWI KPRLSATVSS VMDRLFKAIT  120
YIKDSHRGRE TLIQIWVPVD QGGTRVLTTI DQPFSLNKGN AQLANYRNIS LNYQFAAEQD  180
SGLSVGLPGR VFLGKVPEWS PDVRFFRVDE YPRVPYAQQC DVRGTIALPV FEQGSKQCLG  240
VLEVVMTTQK VNYRSELESV CKALEAVHLR SSESLTPQKA KECTSSYHVA LPEILDVLKS  300
ACGSHGLPLA QTWVPCVQQG KEGCRHSDDN LSLCVSTIDS ACYIADPGMR GFHEACSEHH  360
LFKGEGVAGK AFLTNQPCFS PDITSYSKTE YPLSHHARMF GLSASVAIRL RSVYTGTSDF  420
VLEFFLPPGC RDPEVQKSML SSLSIIIQRV CRRLRVVTDE ELKEEALVLD NKVTVSLDGP  480
LQGKTMSDNE NTRSGSSQEE SCGDGVTQFD KGKAVLAQKP LPRLPQEFNA KLSPGATVEY  540
STVGGNASTA VRSGDKKRAK AEKTITLEVL RQHFAGSLKD AAKSIGVCPT TLKRICRQHG  600
IKRWPSRKIK KVGHSLQKLQ VVIDSVHGAS GAFQIGSFYS NFPDLASPNT TSGTSPFPTG  660
NQFHAPQATG LEPEGGPVSP RSATSKSPSS SCSQSSSSSQ FCSSGTQQQP STWNVSGNED  720
PHGGVTSNEG SIKRGRSEAE LQIPYQEPTS LISGSLSQRS LVEQYNPDAR PPLPKNVGQF  780
TQEGDFWRVK VTYGEEKIRF RMLKSWRFID LVQEVVRRFN IGDMGGFHIK YLDDDSEWVL  840
LTCDADLEEC IDICRSSQRQ TIKLSLQVSH SHSRSSVGSN SHL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00154	DAP	Transfer from AT1G20640	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010692542.1	0.0	PREDICTED: protein NLP4
TrEMBL	A0A0K9S3Z8	0.0	A0A0K9S3Z8_SPIOL; Uncharacterized protein
STRING	XP_010692542.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein