PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca55170.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family B3
Protein Properties Length: 423aa    MW: 48375.3 Da    PI: 6.5959
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca55170.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.71.5e-114554498
                -EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
          B3 44 rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                + W+v    + ++g++++++GW+eF++a+ L++gDf++F+++++  f  +v++++
  Dca55170.1  4 KCWRVAA-KEEGDGTVYFRNGWSEFAEAHMLQVGDFLLFEYEEQPIF--NVTIYD 55
                5688888.3566667*************************9887777..777776 PP
2B345.91e-141492261090
                 HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
          B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                 +++  +l+lpk    + ++ k  + ++tle++ g +W vkl + +k++r+++++GWk+F ++n++  gD++ F++++++ +
  Dca55170.1 149 THQFTQLTLPKAISLQKNLMK--KDEMTLENTMGDRWLVKL-FHRKDSRTIMSSGWKSFFEENQVAPGDTLEFEFVSDNLA 226
                 444467899999855554443..348***************.555556778999********************9876544 PP
3B346.95e-153073741686
                 EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
          B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                 l +pk+ +e+h++ +e   +++++d++g+ W ++++ r+++gr+ ltkGW eF k +++k gD++ F++++
  Dca55170.1 307 LHIPKHVTESHNLTNED--KVVVRDPDGKCWPLEVS-RRRDGRMALTKGWVEFWKGHNIKPGDVLHFSFVS 374
                 78*********988555..8***************4.7788889***********************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.239157IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.8E-14359IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-13361IPR015300DNA-binding pseudobarrel domain
CDDcd100175.32E-10455No hitNo description
PfamPF023629.0E-9455IPR003340B3 DNA binding domain
SuperFamilySSF1019361.04E-15137232IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-15138232IPR015300DNA-binding pseudobarrel domain
CDDcd100179.23E-10140224No hitNo description
PROSITE profilePS5086313.211140234IPR003340B3 DNA binding domain
SMARTSM010194.2E-7144234IPR003340B3 DNA binding domain
PfamPF023622.4E-12150226IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-19290384IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-19291384IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.464292386IPR003340B3 DNA binding domain
SMARTSM010194.3E-8294386IPR003340B3 DNA binding domain
PfamPF023622.0E-12307375IPR003340B3 DNA binding domain
CDDcd100173.00E-14307373No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MTNKCWRVAA KEEGDGTVYF RNGWSEFAEA HMLQVGDFLL FEYEEQPIFN VTIYDQNGCQ  60
KTFEIDRGGK HNPERITDVE EQEENRVLGF EPKTVETSPP EQQKTSRLSK MKYVKRKSKK  120
KNGKRTLTTM VYRIGNNIAF SVKIHKSKTH QFTQLTLPKA ISLQKNLMKK DEMTLENTMG  180
DRWLVKLFHR KDSRTIMSSG WKSFFEENQV APGDTLEFEF VSDNLAQVRV LKISQFEQNS  240
EDTTSLNGED IAQDTDGEVD ELDACTTDVT PIKTSTGSKR GRKRGSSDLS GSSFTFVWRP  300
ATQGLYLHIP KHVTESHNLT NEDKVVVRDP DGKCWPLEVS RRRDGRMALT KGWVEFWKGH  360
NIKPGDVLHF SFVSDYLVQV NITRGEPLNS PNSTSIKEDT VNLYISDDDE PATLPESVFN  420
LHA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.15e-17B3 family protein