PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca55071.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family bZIP
Protein Properties Length: 368aa    MW: 40236.7 Da    PI: 5.1625
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca55071.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_146.48.6e-15202255356
                 XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
      bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                 ++kr rr+ +NRe+ArrsR+RK+a + eLe+ v +   eN++  k+l  ++++ 
  Dca55071.1 202 DVKRVRRMLSNRESARRSRRRKQAHLTELETQVSQVRVENSTILKRLTDISQKF 255
                 689*************************************99998887777665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.0E-11199256No hitNo description
SMARTSM003382.3E-17200264IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.944202257IPR004827Basic-leucine zipper domain
PfamPF001702.0E-12203253IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.35E-11204253No hitNo description
PROSITE patternPS000360207222IPR004827Basic-leucine zipper domain
PfamPF124981.4E-21271361IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MDRVFSVGDI SDQFWSPPPP PPPCDGGDPS MNRSASEWAF ERFLQESTAE NDVVEIKNNH  60
NNLNNNNNNN RQRSEIGEGV VDETTSLAVD SEEYQAFLKS RLNLACAAVA MTKAPFVINQ  120
GSNPATAIAT QVSMESQSSS RPPCKGFENK EVGGPAPNPP LPATQKKPIA QPVQATSYSS  180
EQSDDDEVEG ENDTTDNTGS TDVKRVRRML SNRESARRSR RRKQAHLTEL ETQVSQVRVE  240
NSTILKRLTD ISQKFNEAAV DNRVLKADVE TLRAKVKMAE ETVKRATGMN PLLQAMSEIS  300
AMGMAAAFNG SNCNSVDAAV PVHHDLKQTH FYQPVENHLP VPPPRVDNGV PNISAVDNVT  360
SVLGVNKM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216223RRSRRRKQ
2218223SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010674829.11e-142PREDICTED: light-inducible protein CPRF2
SwissprotQ990901e-92CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLA0A0K9RTS91e-133A0A0K9RTS9_SPIOL; Uncharacterized protein
STRINGXP_010674829.11e-142(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.24e-62bZIP family protein
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]