PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca54893.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

NAC

Protein Properties

Length: 361aa MW: 41021.2 Da PI: 7.2514

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca54893.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.9	9.7e-54	16	145	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +ppGfrFhPtdeel+++yLkkkv+ +k+++ +vi+evd++k+ePwdL++++k ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + + + Dca54893.1 16 VPPGFRFHPTDEELLHYYLKKKVSYQKFDM-DVIREVDLNKMEPWDLQERCKIgstPQNEWYFFSHKDRKYPTGSRTNRATNAGFWKATGRDKCIRN-T 112 69**************************.9***********964444222455*********************************9.8 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrle 129 +++g++ktLvfy+grap+g+ktdW+mheyrle Dca54893.1 113 FKKIGMRKTLVFYRGRAPHGQKTDWIMHEYRLE 145 899**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-61	14	167	IPR003441	NAC domain
PROSITE profile	PS51005	57.784	16	167	IPR003441	NAC domain
Pfam	PF02365	4.2E-28	17	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009834	Biological Process	plant-type secondary cell wall biogenesis
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048829	Biological Process	root cap development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MGSSSNNNNS NSNGGVPPGF RFHPTDEELL HYYLKKKVSY QKFDMDVIRE VDLNKMEPWD 60 LQERCKIGST PQNEWYFFSH KDRKYPTGSR TNRATNAGFW KATGRDKCIR NTFKKIGMRK 120 TLVFYRGRAP HGQKTDWIMH EYRLEDGDDP NGATCEDGWV VCRVFKKKNL FKVGGEQQNV 180 GGGGGATTSS NTSDQLLIHG SSSNNNNTQS RAFIPRDQYG HHHQHQQHHL LLRSDQATSP 240 FDLYMSKPTD LGLHNNYAHP HQITPLPDYA TVAHPNQLYN SVGEAGPTLE MAACEPSDPH 300 HHHHQGINEW TMLDRAVVGG QDDEQGNGND LSTTVHDMTQ QQQQQQQLSL RGEMDFWGYA 360 K

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MGSSSNNNNS NSNGGVPPGF RFHPTDEELL HYYLKKKVSY QKFDMDVIRE VDLNKMEPWD  60
LQERCKIGST PQNEWYFFSH KDRKYPTGSR TNRATNAGFW KATGRDKCIR NTFKKIGMRK  120
TLVFYRGRAP HGQKTDWIMH EYRLEDGDDP NGATCEDGWV VCRVFKKKNL FKVGGEQQNV  180
GGGGGATTSS NTSDQLLIHG SSSNNNNTQS RAFIPRDQYG HHHQHQQHHL LLRSDQATSP  240
FDLYMSKPTD LGLHNNYAHP HQITPLPDYA TVAHPNQLYN SVGEAGPTLE MAACEPSDPH  300
HHHHQGINEW TMLDRAVVGG QDDEQGNGND LSTTVHDMTQ QQQQQQQLSL RGEMDFWGYA  360
K

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-54	16	169	17	167	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-54	16	169	17	167	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-54	16	169	17	167	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-54	16	169	17	167	NO APICAL MERISTEM PROTEIN
3swm_A	7e-54	16	169	20	170	NAC domain-containing protein 19
3swm_B	7e-54	16	169	20	170	NAC domain-containing protein 19
3swm_C	7e-54	16	169	20	170	NAC domain-containing protein 19
3swm_D	7e-54	16	169	20	170	NAC domain-containing protein 19
3swp_A	7e-54	16	169	20	170	NAC domain-containing protein 19
3swp_B	7e-54	16	169	20	170	NAC domain-containing protein 19
3swp_C	7e-54	16	169	20	170	NAC domain-containing protein 19
3swp_D	7e-54	16	169	20	170	NAC domain-containing protein 19
4dul_A	5e-54	16	169	17	167	NAC domain-containing protein 19
4dul_B	5e-54	16	169	17	167	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:20197506}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00431	DAP	Transfer from AT4G10350	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010688726.1	1e-175	PREDICTED: protein BEARSKIN2
Swissprot	Q9SV87	1e-133	BRN2_ARATH; Protein BEARSKIN2
TrEMBL	A0A0K9S0Z7	1e-151	A0A0K9S0Z7_SPIOL; Uncharacterized protein
STRING	XP_010688726.1	1e-174	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G10350.1	1e-123	NAC domain containing protein 70

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]