PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca54713.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 307aa    MW: 34235.6 Da    PI: 4.4437
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca54713.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.86.7e-151663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++ Ed++l+  ++ +G g+W++ ++  g+ R++k+c++rw +yl
       Dca54713.1 16 KGAWSQAEDLKLISFIRTHGHGNWRALPKLAGLARCGKSCRLRWVNYL 63
                     79********************************************97 PP
2Myb_DNA-binding52.88.9e-1769114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T +E+e +++++k+lG++ W++Ia++++ gRt++++k+ w+++l
       Dca54713.1  69 RGNFTLDEEEAIIRLHKELGNK-WSKIAAKFP-GRTDNEIKNVWNTHL 114
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-21766IPR009057Homeodomain-like
PROSITE profilePS5129413.1091163IPR017930Myb domain
SuperFamilySSF466899.56E-2914110IPR009057Homeodomain-like
SMARTSM007176.3E-111565IPR001005SANT/Myb domain
PfamPF002493.0E-141663IPR001005SANT/Myb domain
CDDcd001673.13E-91863No hitNo description
PROSITE profilePS5129424.86464118IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2567117IPR009057Homeodomain-like
SMARTSM007171.3E-1468116IPR001005SANT/Myb domain
PfamPF002494.4E-1569114IPR001005SANT/Myb domain
CDDcd001677.17E-1171114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MGKGRKPCCD KAGVTKGAWS QAEDLKLISF IRTHGHGNWR ALPKLAGLAR CGKSCRLRWV  60
NYLRPDLRRG NFTLDEEEAI IRLHKELGNK WSKIAAKFPG RTDNEIKNVW NTHLKKRTKD  120
DASDKQSEDS CNILPASTST DETLVESTKD DSSEQKLTPQ TDDAMEDITE HCSLSLTSHS  180
SSQQPSPPGH DIANLDPVLE DKSTSDKNES SAIFAECIEI DTLEELTEIP FDADLDLWDL  240
LDSDQSDAAD VSDVHLSDID TSLQPTTQND SISCDDTSCS EGDRNKWWLV YLENELGLNH  300
TENTSSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-23141185108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021760419.13e-97transcription factor MYB63-like
STRINGXP_010684846.16e-90(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16490.18e-65myb domain protein 58