PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Dca5430.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 431aa MW: 47857.3 Da PI: 5.0227 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.5 | 7.9e-40 | 112 | 172 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Dca5430.1 112 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKNKSSA 172 7899******************************************************976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-30 | 108 | 169 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.8E-32 | 114 | 170 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.891 | 116 | 170 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 118 | 154 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 431 aa Download sequence Send to blast |
MLDPAITLFG RRIQVKGDLE DEILEEISPT NNINDSTFDD EVDKEVTEEE STENDQQDDS 60 MAEVMDESTN ATAMSESIDQ TEKPMEKDSD AVENENKSND EKNSEQKQLK KPDKILPCPR 120 CNSMDTKFCY YNNYNVNQPR HFCKSCQRYW TAGGTMRNVP VGAGRRKNKS SASRYCHLTV 180 SEALQSARFD VSNVVHHPGL QTNGTVLTFG PDNPFCEPVS PVVDKKVSKN RDDRSSGSTV 240 TNCLVDDRSK KGVEELKKPV DGFGNQMAPA APQCFQWPYM WNPAVPVPSP FCPSVFPVPI 300 FHPPYWNGAP VPWNVPWGPQ CSPGSNPISP TLGKHTRDGE MVTPTTTTTT AVLMPKTLRI 360 DNPDEAAKSS IWSTLGIKKD KSDGQSKGFF NSFQPKEADK NDGQVDAHAP QAFIKANPVA 420 LCRSLNFQER A |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00394 | DAP | Transfer from AT3G47500 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021761615.1 | 1e-161 | cyclic dof factor 3-like isoform X1 | ||||
TrEMBL | A0A0K9R752 | 1e-145 | A0A0K9R752_SPIOL; Uncharacterized protein | ||||
STRING | XP_010678503.1 | 1e-152 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G47500.1 | 6e-79 | cycling DOF factor 3 |