PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca54191.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | ERF | ||||||||
Protein Properties | Length: 315aa MW: 35163.3 Da PI: 5.1921 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.6 | 2e-20 | 145 | 195 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp + k r++lg+++ta eAa+a+++a+ +l+g Dca54191.1 145 HYRGVRRRP-WGKYAAEIRDP---NkKGSRVWLGTYDTAIEAARAYDRAAFRLRG 195 7********.**********9...4345*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.8E-32 | 144 | 204 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.711 | 145 | 203 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-14 | 145 | 195 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-23 | 145 | 205 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.0E-38 | 145 | 209 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-13 | 146 | 157 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.10E-26 | 153 | 203 | No hit | No description |
PRINTS | PR00367 | 1.8E-13 | 185 | 205 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MATTNNALEF IENLLFNELS PLPQNSMFTF NPNNNNGNSF SGFESSCVTT SSNDSADSYS 60 LEKQPSITSV KAEEFALDFD FDFDFDLNFT FPTPKPAAKP KPAEEEKKPR KRPAMKIAVP 120 KPAKNYEVVE LTTESAEVVE EERRHYRGVR RRPWGKYAAE IRDPNKKGSR VWLGTYDTAI 180 EAARAYDRAA FRLRGSKAIL NFPLEVGKLV QESTAIAPAV ISSSDSKVDN NTKRKIDEIV 240 TNNGNGSDEK SEKKVKVEES KTVSLEEVRP LTPSSWTAFW EVDDNKEVKD GIFSVPPLSP 300 LSPHPTFGFP QVAVN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-29 | 144 | 206 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00556 | DAP | Transfer from AT5G51190 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021768012.1 | 9e-71 | ethylene-responsive transcription factor ERF104-like | ||||
Swissprot | Q8VY90 | 2e-53 | EF105_ARATH; Ethylene-responsive transcription factor ERF105 | ||||
TrEMBL | A0A0M4KPH8 | 3e-62 | A0A0M4KPH8_9ROSA; AP2/EREBP family transcription factor-like protein 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51190.1 | 5e-24 | ERF family protein |
Publications ? help Back to Top | |||
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