PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca54007.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | bHLH | ||||||||
Protein Properties | Length: 237aa MW: 27046.5 Da PI: 4.8431 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 15.1 | 4.3e-05 | 41 | 116 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC..........................TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkas.......................kapskKlsKaeiLekAveYIksL 54 r+ + erE+ Rd++N+ f++L + l ++ + + + Ka iL ++++++k++ Dca54007.1 41 RVVKAEREKLKRDQLNELFNKLGSFLGMLTyfptfapfnidlhesfpemffcaELSEQNNGKACILNETIRHLKDM 116 67789*********************99777999******************666666699**********99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 8.575 | 39 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-7 | 41 | 141 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.0E-8 | 41 | 67 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.0E-8 | 94 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MDVFYDDDND HLVNEESDAP ENEVDDGSPP TKKRRGRIPI RVVKAEREKL KRDQLNELFN 60 KLGSFLGMLT YFPTFAPFNI DLHESFPEMF FCAELSEQNN GKACILNETI RHLKDMVSQI 120 RSLRNENLTL LSESQYVTTE NHELKDENVT LEDQIKRVKT ELQEKLGQSK PDLNITSREP 180 PILGPLYVVP MTPNVQAASQ PPAAVRKPQP RYPTPADSWP LHLLSKQPEM TTESSAS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010685315.1 | 1e-72 | PREDICTED: transcription factor bHLH47 | ||||
Refseq | XP_010685316.1 | 1e-72 | PREDICTED: transcription factor bHLH47 | ||||
TrEMBL | A0A0K9RH89 | 1e-65 | A0A0K9RH89_SPIOL; Uncharacterized protein | ||||
STRING | XP_010685315.1 | 5e-72 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47640.3 | 2e-34 | bHLH family protein |