PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca53994.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

bHLH

Protein Properties

Length: 282aa MW: 29882.2 Da PI: 6.897

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca53994.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.1	4.4e-10	159	206	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P +k Ka +L + ++YI+sLq Dca53994.1 159 SHSLAERARREKISERMKMLQDLVPGT----NKVIGKALVLDEIINYIQSLQ 206 8***********************8....666***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.93E-17	153	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.35E-10	153	210	No hit	No description
PROSITE profile	PS50888	15.332	155	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.3E-17	155	221	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-7	159	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.3E-11	161	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MDPPLIGEGS FSATNPSLSE IWPFNGGGNL GLRMGSGGFT SGFIDHLLNN NSGGGGGGSG 60 GGCGGGGSLE ESSVTEQSGS LGVGGVNGRK RKEDHFSKVD SITSSSGIDL KEPPGKRVKT 120 STSREDNGSS KANNPSDKPA EPLKDYIHVR ARRGQATDSH SLAERARREK ISERMKMLQD 180 LVPGTNKVIG KALVLDEIIN YIQSLQRQVE FLSMKLEAVN STMIPSISGF HSKDVNQLGM 240 PSFDPSGMMF SAQAARELAT ASEGQHSEWL HMQLGGNFER TS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010678640.1	1e-130	PREDICTED: transcription factor bHLH79
Swissprot	Q9LV17	1e-65	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A0K9R5V2	1e-112	A0A0K9R5V2_SPIOL; Uncharacterized protein
STRING	XP_010678640.1	1e-130	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	3e-66	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]