PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca53961.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

Dof

Protein Properties

Length: 431aa MW: 47857.3 Da PI: 5.0227

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca53961.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.5	7.9e-40	112	172	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Dca53961.1 112 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKNKSSA 172 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	108	169	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.8E-32	114	170	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.891	116	170	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	118	154	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MLDPAITLFG RRIQVKGDLE DEILEEISPT NNINDSTFDD EVDKEVTEEE STENDQQDDS 60 MAEVMDESTN ATAMSESIDQ TEKPMEKDSD AVENENKSND EKNSEQKQLK KPDKILPCPR 120 CNSMDTKFCY YNNYNVNQPR HFCKSCQRYW TAGGTMRNVP VGAGRRKNKS SASRYCHLTV 180 SEALQSARFD VSNVVHHPGL QTNGTVLTFG PDNPFCEPVS PVVDKKVSKN RDDRSSGSTV 240 TNCLVDDRSK KGVEELKKPV DGFGNQMAPA APQCFQWPYM WNPAVPVPSP FCPSVFPVPI 300 FHPPYWNGAP VPWNVPWGPQ CSPGSNPISP TLGKHTRDGE MVTPTTTTTT AVLMPKTLRI 360 DNPDEAAKSS IWSTLGIKKD KSDGQSKGFF NSFQPKEADK NDGQVDAHAP QAFIKANPVA 420 LCRSLNFQER A

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MLDPAITLFG RRIQVKGDLE DEILEEISPT NNINDSTFDD EVDKEVTEEE STENDQQDDS  60
MAEVMDESTN ATAMSESIDQ TEKPMEKDSD AVENENKSND EKNSEQKQLK KPDKILPCPR  120
CNSMDTKFCY YNNYNVNQPR HFCKSCQRYW TAGGTMRNVP VGAGRRKNKS SASRYCHLTV  180
SEALQSARFD VSNVVHHPGL QTNGTVLTFG PDNPFCEPVS PVVDKKVSKN RDDRSSGSTV  240
TNCLVDDRSK KGVEELKKPV DGFGNQMAPA APQCFQWPYM WNPAVPVPSP FCPSVFPVPI  300
FHPPYWNGAP VPWNVPWGPQ CSPGSNPISP TLGKHTRDGE MVTPTTTTTT AVLMPKTLRI  360
DNPDEAAKSS IWSTLGIKKD KSDGQSKGFF NSFQPKEADK NDGQVDAHAP QAFIKANPVA  420
LCRSLNFQER A

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021761615.1	1e-161	cyclic dof factor 3-like isoform X1
TrEMBL	A0A0K9R752	1e-145	A0A0K9R752_SPIOL; Uncharacterized protein
STRING	XP_010678503.1	1e-152	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	6e-79	cycling DOF factor 3