PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca53558.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family Dof
Protein Properties Length: 379aa    MW: 40920.4 Da    PI: 6.8181
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca53558.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.14e-38103163262
      zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                 ++k+++cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grr+nk+ s
  Dca53558.1 103 PDKIVPCPRCHSSDTKFCYFNNYNVNQPRHFCKSCQRYWTAGGTVRNVPVGAGRRRNKHLS 163
                 68999*****************************************************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-27101160IPR003851Zinc finger, Dof-type
PfamPF027011.9E-31105161IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.379107161IPR003851Zinc finger, Dof-type
PROSITE patternPS013610109145IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MAEVAKDPAI KLFGRTISLP ETQLSDDSLS MDHESSMRTK ADSEDGKNDT LRTTDEAASL  60
EPRQVKQSET SALQSMSSKL SAKPEGHNEE SDDSEEPSLS KRPDKIVPCP RCHSSDTKFC  120
YFNNYNVNQP RHFCKSCQRY WTAGGTVRNV PVGAGRRRNK HLSSQFRHLV ASSDGGATAV  180
VDTSDPRTRL LSCEQSSSSC TTSTPNEMVL KFGPESPHCQ SNGGSGVNRG NYEQNAKEGL  240
QCDSPSTGSS LAARVVNSDL SLQQPLYHCN VPMLPQVTSQ APNSSSCGPF LVPGCTQSPP  300
NISLQFVPSP YWNYVPVWVA GSGNMSLAVP NRCISPPFLS TGNGLQVLGK HPRDSTPGEI  360
TADCVSLSKT LRIPDHEAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010695534.11e-123PREDICTED: cyclic dof factor 2
TrEMBLA0A0J8B9K01e-122A0A0J8B9K0_BETVU; Uncharacterized protein
STRINGXP_010695534.11e-123(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47500.11e-42cycling DOF factor 3