PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca53558.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | Dof | ||||||||
Protein Properties | Length: 379aa MW: 40920.4 Da PI: 6.8181 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.1 | 4e-38 | 103 | 163 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+++cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grr+nk+ s Dca53558.1 103 PDKIVPCPRCHSSDTKFCYFNNYNVNQPRHFCKSCQRYWTAGGTVRNVPVGAGRRRNKHLS 163 68999*****************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-27 | 101 | 160 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.9E-31 | 105 | 161 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.379 | 107 | 161 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 109 | 145 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MAEVAKDPAI KLFGRTISLP ETQLSDDSLS MDHESSMRTK ADSEDGKNDT LRTTDEAASL 60 EPRQVKQSET SALQSMSSKL SAKPEGHNEE SDDSEEPSLS KRPDKIVPCP RCHSSDTKFC 120 YFNNYNVNQP RHFCKSCQRY WTAGGTVRNV PVGAGRRRNK HLSSQFRHLV ASSDGGATAV 180 VDTSDPRTRL LSCEQSSSSC TTSTPNEMVL KFGPESPHCQ SNGGSGVNRG NYEQNAKEGL 240 QCDSPSTGSS LAARVVNSDL SLQQPLYHCN VPMLPQVTSQ APNSSSCGPF LVPGCTQSPP 300 NISLQFVPSP YWNYVPVWVA GSGNMSLAVP NRCISPPFLS TGNGLQVLGK HPRDSTPGEI 360 TADCVSLSKT LRIPDHEAS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010695534.1 | 1e-123 | PREDICTED: cyclic dof factor 2 | ||||
TrEMBL | A0A0J8B9K0 | 1e-122 | A0A0J8B9K0_BETVU; Uncharacterized protein | ||||
STRING | XP_010695534.1 | 1e-123 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47500.1 | 1e-42 | cycling DOF factor 3 |