PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dca53064.1

Organism

Dianthus caryophyllus

Taxonomic ID

3570

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus

Family

C3H

Protein Properties

Length: 569aa MW: 61671.5 Da PI: 8.3403

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dca53064.1	genome	DCA	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.4	7.8e-06	519	541	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +++C+ff + C+ G++C+F H Dca53064.1 519 RKPCKFFNSSKGCRNGPTCPFDH 541 789******************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.328	516	544	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.6E-4	519	541	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.7E-6	521	550	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 569 aa Download sequence Send to blast
MVETRTSGSR SKEHSSSSKQ VRIPMIKWKC PPKIMLKSEW QVAAGEESRE RIAQKYREAR 60 ILEALYPRVS TIPSSPSVSP EAKSCDYDDS QTPIVPLTPI EEEIKDSMLV ESMPCSESVE 120 CNVPPESKAL SDVELHSTAA GFDADVHTAA TFALTALLKA NENGNMVDTD LLIKILKEPK 180 MVEALLNMRT TEIVSSVDSN HEAHAKLKSA VDTSFNPQTI QADSEIFGSN LNLRVSDLGS 240 SRPSSSVSST LETQVSIGSF RSHRSVSTPA IKLDNASSRP SSSVSSTLET QVSIGSFRSH 300 PSVSTPAIKL DNASSRPSSS VSSTLETQVS FGSFLSHPSV STPAIKLDNA SNIPRNAVPT 360 SSSAMFGSDL NPKIMDLKSF RPSPLFSSTK PNGQSLTRET LMFFHSLPSH SSVCTAASKA 420 VVPISGTHFP PKFDPLIPDF ISSQPTSMVS STRVEVQSLT PKSQMLTNSF TSHSSVDVRV 480 VKDANYYKNL VRLHGMVGNE THEHQPPECK VSAPEAKARK PCKFFNSSKG CRNGPTCPFD 540 HASLPNPQAG KFLDAFRSKR FKISHEITG

Sequence ? help Back to Top

Protein Sequence Length: 569 aa Download sequence Send to blast

MVETRTSGSR SKEHSSSSKQ VRIPMIKWKC PPKIMLKSEW QVAAGEESRE RIAQKYREAR  60
ILEALYPRVS TIPSSPSVSP EAKSCDYDDS QTPIVPLTPI EEEIKDSMLV ESMPCSESVE  120
CNVPPESKAL SDVELHSTAA GFDADVHTAA TFALTALLKA NENGNMVDTD LLIKILKEPK  180
MVEALLNMRT TEIVSSVDSN HEAHAKLKSA VDTSFNPQTI QADSEIFGSN LNLRVSDLGS  240
SRPSSSVSST LETQVSIGSF RSHRSVSTPA IKLDNASSRP SSSVSSTLET QVSIGSFRSH  300
PSVSTPAIKL DNASSRPSSS VSSTLETQVS FGSFLSHPSV STPAIKLDNA SNIPRNAVPT  360
SSSAMFGSDL NPKIMDLKSF RPSPLFSSTK PNGQSLTRET LMFFHSLPSH SSVCTAASKA  420
VVPISGTHFP PKFDPLIPDF ISSQPTSMVS STRVEVQSLT PKSQMLTNSF TSHSSVDVRV  480
VKDANYYKNL VRLHGMVGNE THEHQPPECK VSAPEAKARK PCKFFNSSKG CRNGPTCPFD  540
HASLPNPQAG KFLDAFRSKR FKISHEITG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-