PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca53047.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family MYB
Protein Properties Length: 328aa    MW: 37448.1 Da    PI: 8.2297
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca53047.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.43e-1793139148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd ll+++v+++G + W+ Ia+ ++ gR +kqc++rw+++l
       Dca53047.1  93 KGQWTIEEDRLLIQLVERYGVRKWSQIAELLN-GRIGKQCRERWHNHL 139
                      799*****************************.*************97 PP
2Myb_DNA-binding52.31.3e-16146186345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       W++eEd +l++a+++ G++ W+ Ia+++  gRt++++k++w+
       Dca53047.1 146 IWSEEEDRILIKAHREIGNK-WAEIAKRLH-GRTENSVKNHWN 186
                      6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.49588143IPR017930Myb domain
SuperFamilySSF466895.03E-3192185IPR009057Homeodomain-like
SMARTSM007177.3E-1692141IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-2392142IPR009057Homeodomain-like
PfamPF002491.1E-1693139IPR001005SANT/Myb domain
CDDcd001671.16E-1496139No hitNo description
SMARTSM007179.5E-15143191IPR001005SANT/Myb domain
PROSITE profilePS5129418.304144193IPR017930Myb domain
CDDcd001673.13E-12147189No hitNo description
Gene3DG3DSA:1.10.10.601.1E-17147187IPR009057Homeodomain-like
PfamPF002495.2E-15147186IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDNISQSVGS HGLGHPQMMV TPINMVSPNV LHHNNPFSYR NFDLIRSYNQ PRDEVSCISP  60
KVNTNIVAKS LSSTNMIRKG FTRRKKKTSL VVKGQWTIEE DRLLIQLVER YGVRKWSQIA  120
ELLNGRIGKQ CRERWHNHLK PNIKDIWSEE EDRILIKAHR EIGNKWAEIA KRLHGRTENS  180
VKNHWNATKR RQFSSRKCRS KHPTQSSLLQ DYIKSLTPEV INAGCRKKPP NSATVNSNNA  240
NTNSNLSNDQ TASLGSSSNC PRLHDDEYDF SEVLEFNFDD HMFEESSIDS LLDCVSDEEA  300
GNTTICEIGD DPDICLGAMV QFEEKLGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-41901931105C-Myb DNA-Binding Domain
1msf_C1e-41901931105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010678927.11e-122PREDICTED: transcription factor MYB98
SwissprotQ9S7L23e-71MYB98_ARATH; Transcription factor MYB98
TrEMBLA0A251PBA31e-81A0A251PBA3_PRUPE; Uncharacterized protein
TrEMBLA0A438KBD17e-82A0A438KBD1_VITVI; Transcription factor MYB98
STRINGXP_010678927.11e-122(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-71myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]