PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca52842.1
Organism
Dianthus caryophyllus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family ERF
Protein Properties Length: 519aa    MW: 58136 Da    PI: 5.765
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca52842.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.4e-18108158255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr ++ +g+++AeIrd + ng   r++lg+f+tae Aa a+++a+ + +g
  Dca52842.1 108 SYRGVRKRP-WGKYAAEIRDSTRNG--VRVWLGTFDTAEAAALAYDQAAFSTRG 158
                 69*******.**********44465..**********************99887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.76E-18107166No hitNo description
SuperFamilySSF541711.05E-21108167IPR016177DNA-binding domain
SMARTSM003808.7E-37108172IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-29108167IPR001471AP2/ERF domain
PROSITE profilePS5103222.893108166IPR001471AP2/ERF domain
PfamPF008479.1E-12108158IPR001471AP2/ERF domain
PRINTSPR003673.1E-10109120IPR001471AP2/ERF domain
PRINTSPR003673.1E-10132148IPR001471AP2/ERF domain
SMARTSM001569.3E-142229491IPR006186Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase
PRINTSPR001144.3E-90249276IPR006186Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase
Gene3DG3DSA:3.60.21.105.2E-123254496IPR029052Metallo-dependent phosphatase-like
SuperFamilySSF563001.05E-102254492IPR029052Metallo-dependent phosphatase-like
PfamPF001492.0E-38254440IPR004843Calcineurin-like phosphoesterase domain, apaH type
PRINTSPR001144.3E-90278305IPR006186Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase
PRINTSPR001144.3E-90311335IPR006186Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase
PROSITE patternPS001250312317IPR006186Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase
PRINTSPR001144.3E-90345371IPR006186Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase
PRINTSPR001144.3E-90374401IPR006186Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase
PRINTSPR001144.3E-90431451IPR006186Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase
PRINTSPR001144.3E-90453469IPR006186Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016787Molecular Functionhydrolase activity
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MSSSSSFYDS SSSGSFSWND EYNHVNFLQN YLPFNANDSE DMFLFEMLAN TVPADMSTTT  60
TTTTTTIASS TQVKEEEVTS DIYNSSSSSS SSSSSNSNSS CNVTEEKSYR GVRKRPWGKY  120
AAEIRDSTRN GVRVWLGTFD TAEAAALAYD QAAFSTRGSM AVLNFPLERV EESLKEMNYK  180
FGEGCSPVLV MKDRLSIRKN KTSNNISKKK NNRDVIRRKN SNSNINSSSS TNNVLVFEDL  240
GSDYLEQLLA ESEGDVHGQY SDLLRIFECG GLPPKSNYLF LGDYVDRGKQ SLETICLLLA  300
FKIKYPENFF LLRGNHECAS VNRIYGFYDE CKRRFNVKLW KVFTDCFNCL PVAALIDEKI  360
LCMHGGLSPD LHNLDQIRSL RRPTDVPESG LLCDLLWSDP SNEVHGWGVN DRGVSYTFGA  420
NKVAETLQKL DVDLICRAHQ VVEDGYEFFA NRRLVTIFSA PNYCGEFDNA GGMMSVDETL  480
MCSFQILKPA DKRPKLGFGS STSGKFGTPT KVRPFRWSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1s70_A1e-15725451165322Serine/threonine protein phosphatase PP1-beta (or delta) catalytic subunit
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010671047.11e-180PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2
TrEMBLA0A0K9RPQ61e-177A0A0K9RPQ6_SPIOL; Serine/threonine-protein phosphatase
STRINGXP_010671047.11e-180(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.16e-39ethylene response factor 1