PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dca52751.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
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Family | NF-YA | ||||||||
Protein Properties | Length: 241aa MW: 26953.4 Da PI: 9.5186 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 98.2 | 8.6e-31 | 154 | 210 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 dep+YVN KQy++Il+RR++Rakl +++kl +k+rkpylheSRh+hA++R RgsgGrF Dca52751.1 154 DEPIYVNVKQYNGILRRRHSRAKLHAQNKL-IKARKPYLHESRHRHAVNRVRGSGGRF 210 79****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.2E-32 | 152 | 213 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 34.358 | 153 | 213 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 8.7E-27 | 155 | 210 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.4E-21 | 156 | 178 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.4E-21 | 187 | 210 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MVSFGLPIFQ PILVEKNFIS QSRNSASLLS QNLSLRVDSP TQVCFNATPF GFQLIDHDSS 60 SSQSSQSNNH DLIATPGINS HDQCHEISEG DIIGQIKPIY STSHITADID YSPTMTFMPY 120 SCGDLYFNGL LSAYAPIMGI TTTRVPLPLD ILQDEPIYVN VKQYNGILRR RHSRAKLHAQ 180 NKLIKARKPY LHESRHRHAV NRVRGSGGRF LSTKKPPQSD TTSTDHHSNN ARKLSISNAF 240 Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-20 | 154 | 215 | 2 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021750059.1 | 3e-79 | nuclear transcription factor Y subunit A-7-like isoform X2 | ||||
TrEMBL | A0A0K9RF32 | 3e-77 | A0A0K9RF32_SPIOL; Uncharacterized protein | ||||
STRING | XP_010666451.1 | 2e-71 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17590.4 | 3e-39 | nuclear factor Y, subunit A8 |